RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 LRRC55Q6ZSA7 311 aa21.26■□□□□ 0.99
COL7A1-207ENST00000467985 EFHBQ8N7U6 833 aa21.26■□□□□ 0.99
COL7A1-207ENST00000467985 HELQQ8TDG4 1101 aa21.26■□□□□ 0.99
COL7A1-207ENST00000467985 MICAL1Q8TDZ2 1067 aa21.26■□□□□ 0.99
COL7A1-207ENST00000467985 TMEM60Q9H2L4 133 aa21.26■□□□□ 0.99
COL7A1-207ENST00000467985 FAM105AQ9NUU6 356 aa21.26■□□□□ 0.99
COL7A1-207ENST00000467985 NOL7Q9UMY1 257 aaKnown RBP21.26■□□□□ 0.99
COL7A1-207ENST00000467985 IRS1P35568 1242 aa21.25■□□□□ 0.99
COL7A1-207ENST00000467985 KRT17Q04695 432 aa21.25■□□□□ 0.99
COL7A1-207ENST00000467985 POU5F1BQ06416 359 aa21.25■□□□□ 0.99
COL7A1-207ENST00000467985 ADAM15Q13444 863 aa21.25■□□□□ 0.99
COL7A1-207ENST00000467985 TFDP1Q14186 410 aa21.25■□□□□ 0.99
COL7A1-207ENST00000467985 GLB1LQ6UWU2 654 aa21.25■□□□□ 0.99
COL7A1-207ENST00000467985 FAM178BQ8IXR5 827 aa21.25■□□□□ 0.99
COL7A1-207ENST00000467985 RNF149Q8NC42 400 aa21.25■□□□□ 0.99
COL7A1-207ENST00000467985 MRPS27Q92552 414 aaKnown RBP21.25■□□□□ 0.99
COL7A1-207ENST00000467985 PGBD4Q96DM1 585 aa21.25■□□□□ 0.99
COL7A1-207ENST00000467985 TUFT1Q9NNX1 390 aa21.25■□□□□ 0.99
COL7A1-207ENST00000467985 BMP2KQ9NSY1 1161 aaPredicted RBP21.25■□□□□ 0.99
COL7A1-207ENST00000467985 SPG21Q9NZD8 308 aa21.25■□□□□ 0.99
COL7A1-207ENST00000467985 HCSTQ9UBK5 93 aa21.25■□□□□ 0.99
COL7A1-207ENST00000467985 POTEMA6NI47 508 aa21.24■□□□□ 0.99
COL7A1-207ENST00000467985 OR52Z1P0C646 297 aa21.24■□□□□ 0.99
COL7A1-207ENST00000467985 RARRES1P49788 294 aa21.24■□□□□ 0.99
COL7A1-207ENST00000467985 ERMNQ8TAM6 284 aa21.24■□□□□ 0.99
COL7A1-207ENST00000467985 CDCA3Q99618 268 aaPredicted RBP21.24■□□□□ 0.99
COL7A1-207ENST00000467985 POLR3CQ9BUI4 534 aaPredicted RBP21.24■□□□□ 0.99
COL7A1-207ENST00000467985 TLE6Q9H808 572 aa21.24■□□□□ 0.99
COL7A1-207ENST00000467985 XPNPEP1Q9NQW7 623 aa21.24■□□□□ 0.99
COL7A1-207ENST00000467985 PRKAG3Q9UGI9 489 aa21.24■□□□□ 0.99
COL7A1-207ENST00000467985 IL9P15248 144 aa21.23■□□□□ 0.99
COL7A1-207ENST00000467985 GTF2F1P35269 517 aaKnown RBP eCLIP21.23■□□□□ 0.99
COL7A1-207ENST00000467985 NRIP1P48552 1158 aa21.23■□□□□ 0.99
COL7A1-207ENST00000467985 ALDH7A1P49419 539 aaKnown RBP21.23■□□□□ 0.99
COL7A1-207ENST00000467985 NCBP1Q09161 790 aaKnown RBP21.23■□□□□ 0.99
COL7A1-207ENST00000467985 ZNF174Q15697 407 aa21.23■□□□□ 0.99
COL7A1-207ENST00000467985 TTC38Q5R3I4 469 aa21.23■□□□□ 0.99
COL7A1-207ENST00000467985 NACC1Q96RE7 527 aa21.23■□□□□ 0.99
COL7A1-207ENST00000467985 MINDY3Q9H8M7 445 aa21.23■□□□□ 0.99
COL7A1-207ENST00000467985 NGRNQ9NPE2 291 aaKnown RBP21.23■□□□□ 0.99
COL7A1-207ENST00000467985 PCDHB2Q9Y5E7 798 aa21.23■□□□□ 0.99
COL7A1-207ENST00000467985 FSCN2O14926 492 aa21.22■□□□□ 0.99
COL7A1-207ENST00000467985 ERLIN2O94905 339 aa21.22■□□□□ 0.99
COL7A1-207ENST00000467985 SPATA31C1P0DKV0 1188 aa21.22■□□□□ 0.99
COL7A1-207ENST00000467985 U2AF2P26368 475 aaKnown RBP eCLIP21.22■□□□□ 0.99
COL7A1-207ENST00000467985 AXLP30530 894 aa21.22■□□□□ 0.99
COL7A1-207ENST00000467985 TECP42680 631 aa21.22■□□□□ 0.99
COL7A1-207ENST00000467985 NDUFV1P49821 464 aa21.22■□□□□ 0.99
COL7A1-207ENST00000467985 PTENP60484 403 aa21.22■□□□□ 0.99
COL7A1-207ENST00000467985 ADGRD2Q7Z7M1 963 aa21.22■□□□□ 0.99
COL7A1-207ENST00000467985 CATSPER3Q86XQ3 398 aa21.22■□□□□ 0.99
COL7A1-207ENST00000467985 IFNLR1Q8IU57 520 aaPredicted RBP21.22■□□□□ 0.99
COL7A1-207ENST00000467985 PIGOQ8TEQ8 1089 aa21.22■□□□□ 0.99
COL7A1-207ENST00000467985 CCDC51Q96ER9 411 aa21.22■□□□□ 0.99
COL7A1-207ENST00000467985 C1QTNF1Q9BXJ1 281 aa21.22■□□□□ 0.99
COL7A1-207ENST00000467985 CD207Q9UJ71 328 aa21.22■□□□□ 0.99
COL7A1-207ENST00000467985 DBR1Q9UK59 544 aaKnown RBP21.22■□□□□ 0.99
COL7A1-207ENST00000467985 TBX10O75333 385 aa21.21■□□□□ 0.99
COL7A1-207ENST00000467985 RPA1P27694 616 aa21.21■□□□□ 0.99
COL7A1-207ENST00000467985 HOXA11P31270 313 aaPredicted RBP21.21■□□□□ 0.99
COL7A1-207ENST00000467985 ARL2P36404 184 aa21.21■□□□□ 0.99
COL7A1-207ENST00000467985 ERVFC1P60507 584 aa21.21■□□□□ 0.99
COL7A1-207ENST00000467985 DLX2Q07687 328 aaPredicted RBP21.21■□□□□ 0.99
COL7A1-207ENST00000467985 SMAD4Q13485 552 aaKnown RBP21.21■□□□□ 0.99
COL7A1-207ENST00000467985 NOMO2Q5JPE7 1267 aa21.21■□□□□ 0.99
COL7A1-207ENST00000467985 RBM23Q86U06 439 aaKnown RBP21.21■□□□□ 0.99
COL7A1-207ENST00000467985 GJD3Q8N144 294 aa21.21■□□□□ 0.99
COL7A1-207ENST00000467985 CNNM3Q8NE01 707 aa21.21■□□□□ 0.99
COL7A1-207ENST00000467985 MCPH1Q8NEM0 835 aa21.21■□□□□ 0.99
COL7A1-207ENST00000467985 LPPQ93052 612 aa21.21■□□□□ 0.99
COL7A1-207ENST00000467985 NFKBIZQ9BYH8 718 aa21.21■□□□□ 0.99
COL7A1-207ENST00000467985 ENTPD7Q9NQZ7 604 aa21.21■□□□□ 0.99
COL7A1-207ENST00000467985 CNTNAP2Q9UHC6 1331 aa21.21■□□□□ 0.99
COL7A1-207ENST00000467985 LINC01565O15544 149 aa21.2■□□□□ 0.98
COL7A1-207ENST00000467985 SRGAP2BP0DMP2 458 aa21.2■□□□□ 0.98
COL7A1-207ENST00000467985 MUTP22033 750 aa21.2■□□□□ 0.98
COL7A1-207ENST00000467985 SSTR3P32745 418 aaPredicted RBP21.2■□□□□ 0.98
COL7A1-207ENST00000467985 MCM2P49736 904 aa21.2■□□□□ 0.98
COL7A1-207ENST00000467985 BCAR1P56945 870 aa21.2■□□□□ 0.98
COL7A1-207ENST00000467985 RNASELQ05823 741 aaKnown RBP21.2■□□□□ 0.98
COL7A1-207ENST00000467985 BMS1Q14692 1282 aaKnown RBP21.2■□□□□ 0.98
COL7A1-207ENST00000467985 SMAD2Q15796 467 aaKnown RBP21.2■□□□□ 0.98
COL7A1-207ENST00000467985 HAUS3Q68CZ6 603 aa21.2■□□□□ 0.98
COL7A1-207ENST00000467985 MRPL10Q7Z7H8 261 aaKnown RBP21.2■□□□□ 0.98
COL7A1-207ENST00000467985 SLC39A11Q8N1S5 342 aa21.2■□□□□ 0.98
COL7A1-207ENST00000467985 URGCPQ8TCY9 931 aa21.2■□□□□ 0.98
COL7A1-207ENST00000467985 TCF25Q9BQ70 676 aa21.2■□□□□ 0.98
COL7A1-207ENST00000467985 UBN1Q9NPG3 1134 aa21.2■□□□□ 0.98
COL7A1-207ENST00000467985 PCDHGC5Q9Y5F6 944 aa21.2■□□□□ 0.98
COL7A1-207ENST00000467985 STK24Q9Y6E0 443 aa21.2■□□□□ 0.98
COL7A1-207ENST00000467985 INO80B-WBP1J3KQ70 363 aa21.19■□□□□ 0.98
COL7A1-207ENST00000467985 MBTPS2O43462 519 aa21.19■□□□□ 0.98
COL7A1-207ENST00000467985 USO1O60763 962 aaKnown RBP21.19■□□□□ 0.98
COL7A1-207ENST00000467985 MED24O75448 989 aa21.19■□□□□ 0.98
COL7A1-207ENST00000467985 OFD1O75665 1012 aa21.19■□□□□ 0.98
COL7A1-207ENST00000467985 EYA4O95677 639 aa21.19■□□□□ 0.98
COL7A1-207ENST00000467985 PBX3P40426 434 aa21.19■□□□□ 0.98
COL7A1-207ENST00000467985 FXR2P51116 673 aaKnown RBP eCLIP21.19■□□□□ 0.98
COL7A1-207ENST00000467985 COASYQ13057 564 aa21.19■□□□□ 0.98
COL7A1-207ENST00000467985 CAPSQ13938 189 aa21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms