RNA–Protein interactions for RNA: ENST00000467182.1

COL4A1-202, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 3

Gene COL4A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-202ENST00000467182 CCDC113Q9H0I3 377 aa14.28□□□□□ -0.12
COL4A1-202ENST00000467182 TMEM134Q9H6X4 195 aa14.28□□□□□ -0.12
COL4A1-202ENST00000467182 RTN4Q9NQC3 1192 aaKnown RBP14.28□□□□□ -0.12
COL4A1-202ENST00000467182 TAB2Q9NYJ8 693 aa14.28□□□□□ -0.12
COL4A1-202ENST00000467182 PTPN22Q9Y2R2 807 aa14.28□□□□□ -0.12
COL4A1-202ENST00000467182 KAT6AQ92794 2004 aa14.27□□□□□ -0.12
COL4A1-202ENST00000467182 PHLPP2Q6ZVD8 1323 aa14.27□□□□□ -0.12
COL4A1-202ENST00000467182 LRRIQ4A6NIV6 560 aa14.27□□□□□ -0.13
COL4A1-202ENST00000467182 ANKRD63C9JTQ0 380 aa14.27□□□□□ -0.13
COL4A1-202ENST00000467182 H0YCG3 227 aa14.27□□□□□ -0.13
COL4A1-202ENST00000467182 TEX33O43247 280 aa14.27□□□□□ -0.13
COL4A1-202ENST00000467182 CBFA2T2O43439 604 aa14.27□□□□□ -0.13
COL4A1-202ENST00000467182 FGFR1OPO95684 399 aaKnown RBP14.27□□□□□ -0.13
COL4A1-202ENST00000467182 PIGRP01833 764 aa14.27□□□□□ -0.13
COL4A1-202ENST00000467182 SCP2P22307 547 aa14.27□□□□□ -0.13
COL4A1-202ENST00000467182 PBX1P40424 430 aa14.27□□□□□ -0.13
COL4A1-202ENST00000467182 CASP4P49662 377 aa14.27□□□□□ -0.13
COL4A1-202ENST00000467182 SNRPFP62306 86 aaKnown RBP14.27□□□□□ -0.13
COL4A1-202ENST00000467182 MYBPC2Q14324 1141 aa14.27□□□□□ -0.13
COL4A1-202ENST00000467182 MXD4Q14582 209 aaPredicted RBP14.27□□□□□ -0.13
COL4A1-202ENST00000467182 FAM114A1Q8IWE2 563 aa14.27□□□□□ -0.13
COL4A1-202ENST00000467182 RETREG2Q8NC44 543 aa14.27□□□□□ -0.13
COL4A1-202ENST00000467182 DEPTORQ8TB45 409 aa14.27□□□□□ -0.13
COL4A1-202ENST00000467182 CGNQ9P2M7 1197 aaKnown RBP14.27□□□□□ -0.13
COL4A1-202ENST00000467182 PCNTO95613 3336 aa14.27□□□□□ -0.13
COL4A1-202ENST00000467182 TRIP12Q14669 1992 aaPredicted RBP14.26□□□□□ -0.13
COL4A1-202ENST00000467182 CETN3O15182 167 aa14.26□□□□□ -0.13
COL4A1-202ENST00000467182 ASAP2O43150 1006 aa14.26□□□□□ -0.13
COL4A1-202ENST00000467182 AKAP3O75969 853 aa14.26□□□□□ -0.13
COL4A1-202ENST00000467182 ADSSP30520 456 aa14.26□□□□□ -0.13
COL4A1-202ENST00000467182 ABCD1P33897 745 aa14.26□□□□□ -0.13
COL4A1-202ENST00000467182 POU5F1BQ06416 359 aa14.26□□□□□ -0.13
COL4A1-202ENST00000467182 PTPN21Q16825 1174 aa14.26□□□□□ -0.13
COL4A1-202ENST00000467182 NFRKBQ6P4R8 1299 aa14.26□□□□□ -0.13
COL4A1-202ENST00000467182 CXCL17Q6UXB2 119 aa14.26□□□□□ -0.13
COL4A1-202ENST00000467182 RUFY4Q6ZNE9 571 aa14.26□□□□□ -0.13
COL4A1-202ENST00000467182 IFNLR1Q8IU57 520 aaPredicted RBP14.26□□□□□ -0.13
COL4A1-202ENST00000467182 RHPN2Q8IUC4 686 aa14.26□□□□□ -0.13
COL4A1-202ENST00000467182 VSTM4Q8IW00 320 aa14.26□□□□□ -0.13
COL4A1-202ENST00000467182 KIAA0319LQ8IZA0 1049 aa14.26□□□□□ -0.13
COL4A1-202ENST00000467182 METTL13Q8N6R0 699 aa14.26□□□□□ -0.13
COL4A1-202ENST00000467182 GOLGA5Q8TBA6 731 aa14.26□□□□□ -0.13
COL4A1-202ENST00000467182 BORCS6Q96GS4 357 aa14.26□□□□□ -0.13
COL4A1-202ENST00000467182 CTAGE1Q96RT6 745 aa14.26□□□□□ -0.13
COL4A1-202ENST00000467182 TUBGCP2Q9BSJ2 902 aa14.26□□□□□ -0.13
COL4A1-202ENST00000467182 NFKBIZQ9BYH8 718 aa14.26□□□□□ -0.13
COL4A1-202ENST00000467182 SPC25Q9HBM1 224 aa14.26□□□□□ -0.13
COL4A1-202ENST00000467182 MAGEC2Q9UBF1 373 aaPredicted RBP14.26□□□□□ -0.13
COL4A1-202ENST00000467182 HDAC6Q9UBN7 1215 aa14.26□□□□□ -0.13
COL4A1-202ENST00000467182 EXOC7Q9UPT5 735 aa14.26□□□□□ -0.13
COL4A1-202ENST00000467182 HTTP42858 3142 aa14.26□□□□□ -0.13
COL4A1-202ENST00000467182 GRIN2DO15399 1336 aa14.25□□□□□ -0.13
COL4A1-202ENST00000467182 SLC16A3O15427 465 aaKnown RBP14.25□□□□□ -0.13
COL4A1-202ENST00000467182 MSCO60682 206 aa14.25□□□□□ -0.13
COL4A1-202ENST00000467182 GNA14O95837 355 aa14.25□□□□□ -0.13
COL4A1-202ENST00000467182 ASGR1P07306 291 aa14.25□□□□□ -0.13
COL4A1-202ENST00000467182 SRGAP2CP0DJJ0 459 aa14.25□□□□□ -0.13
COL4A1-202ENST00000467182 RPL13P26373 211 aaKnown RBP14.25□□□□□ -0.13
COL4A1-202ENST00000467182 DNM2P50570 870 aa14.25□□□□□ -0.13
COL4A1-202ENST00000467182 MCCD1P59942 119 aaPredicted RBP14.25□□□□□ -0.13
COL4A1-202ENST00000467182 PTENP60484 403 aa14.25□□□□□ -0.13
COL4A1-202ENST00000467182 ZNF200P98182 395 aaPredicted RBP14.25□□□□□ -0.13
COL4A1-202ENST00000467182 KCNA10Q16322 511 aa14.25□□□□□ -0.13
COL4A1-202ENST00000467182 HS2ST1Q7LGA3 356 aa14.25□□□□□ -0.13
COL4A1-202ENST00000467182 TRIM59Q8IWR1 403 aa14.25□□□□□ -0.13
COL4A1-202ENST00000467182 SYCP3Q8IZU3 236 aa14.25□□□□□ -0.13
COL4A1-202ENST00000467182 RNF149Q8NC42 400 aa14.25□□□□□ -0.13
COL4A1-202ENST00000467182 ZSWIM2Q8NEG5 633 aa14.25□□□□□ -0.13
COL4A1-202ENST00000467182 SH3TC2Q8TF17 1288 aa14.25□□□□□ -0.13
COL4A1-202ENST00000467182 CBWD1Q9BRT8 395 aa14.25□□□□□ -0.13
COL4A1-202ENST00000467182 VPS16Q9H269 839 aa14.25□□□□□ -0.13
COL4A1-202ENST00000467182 IFT122Q9HBG6 1241 aa14.25□□□□□ -0.13
COL4A1-202ENST00000467182 HMX1Q9NP08 348 aaPredicted RBP14.25□□□□□ -0.13
COL4A1-202ENST00000467182 USP20Q9Y2K6 914 aa14.25□□□□□ -0.13
COL4A1-202ENST00000467182 STYXL1Q9Y6J8 313 aa14.25□□□□□ -0.13
COL4A1-202ENST00000467182 SMIM35A0A1B0GVV1 85 aa14.24□□□□□ -0.13
COL4A1-202ENST00000467182 C17orf102A2RUQ5 167 aa14.24□□□□□ -0.13
COL4A1-202ENST00000467182 TTLL13PA6NNM8 815 aa14.24□□□□□ -0.13
COL4A1-202ENST00000467182 LGALS16A8MUM7 142 aa14.24□□□□□ -0.13
COL4A1-202ENST00000467182 K7ERI5 159 aa14.24□□□□□ -0.13
COL4A1-202ENST00000467182 TREHO43280 583 aa14.24□□□□□ -0.13
COL4A1-202ENST00000467182 ZEB2O60315 1214 aa14.24□□□□□ -0.13
COL4A1-202ENST00000467182 VTNP04004 478 aa14.24□□□□□ -0.13
COL4A1-202ENST00000467182 MTIF2P46199 727 aaKnown RBP14.24□□□□□ -0.13
COL4A1-202ENST00000467182 GPC3P51654 580 aa14.24□□□□□ -0.13
COL4A1-202ENST00000467182 MBTD1Q05BQ5 628 aa14.24□□□□□ -0.13
COL4A1-202ENST00000467182 TFDP1Q14186 410 aa14.24□□□□□ -0.13
COL4A1-202ENST00000467182 MAN2A1Q16706 1144 aa14.24□□□□□ -0.13
COL4A1-202ENST00000467182 NBPF20Q3BBV1 942 aa14.24□□□□□ -0.13
COL4A1-202ENST00000467182 FRMD5Q7Z6J6 570 aa14.24□□□□□ -0.13
COL4A1-202ENST00000467182 SPC24Q8NBT2 197 aa14.24□□□□□ -0.13
COL4A1-202ENST00000467182 ZNF668Q96K58 619 aaPredicted RBP14.24□□□□□ -0.13
COL4A1-202ENST00000467182 MKNK1Q9BUB5 465 aa14.24□□□□□ -0.13
COL4A1-202ENST00000467182 HAPLN2Q9GZV7 340 aa14.24□□□□□ -0.13
COL4A1-202ENST00000467182 C2orf40Q9H1Z8 148 aa14.24□□□□□ -0.13
COL4A1-202ENST00000467182 FZD8Q9H461 694 aa14.24□□□□□ -0.13
COL4A1-202ENST00000467182 MINDY3Q9H8M7 445 aa14.24□□□□□ -0.13
COL4A1-202ENST00000467182 HSPBP1Q9NZL4 362 aa14.24□□□□□ -0.13
COL4A1-202ENST00000467182 GTF2IRD1Q9UHL9 959 aa14.24□□□□□ -0.13
COL4A1-202ENST00000467182 A0A087WZ62 844 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms