RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 SEMA6BQ9H3T3 888 aa12.91□□□□□ -0.34
CUX1-207ENST00000465461 PIN4Q9Y237 131 aaKnown RBP12.91□□□□□ -0.34
CUX1-207ENST00000465461 ADGRA3Q8IWK6 1321 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 TTLL13PA6NNM8 815 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 CCDC169A6NNP5 214 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 RFXAPO00287 272 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 SLC26A4O43511 780 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 TSPAN1O60635 241 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 EDN1P05305 212 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 FGFR1P11362 822 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 HOXA11P31270 313 aaPredicted RBP12.9□□□□□ -0.34
CUX1-207ENST00000465461 TXLNAP40222 546 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 SARSP49591 514 aaKnown RBP12.9□□□□□ -0.34
CUX1-207ENST00000465461 KRT85P78386 507 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 NUCB2P80303 420 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 GRIN2CQ14957 1233 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 AMHR2Q16671 573 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 PAN2Q504Q3 1202 aaKnown RBP12.9□□□□□ -0.34
CUX1-207ENST00000465461 PPP2R2DQ66LE6 453 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 ATL3Q6DD88 541 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 SLC24A5Q71RS6 500 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 DYMQ7RTS9 669 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 CRIPAKQ8N1N5 446 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 RNF169Q8NCN4 708 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 DEPTORQ8TB45 409 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 LARP4BQ92615 738 aaKnown RBP12.9□□□□□ -0.34
CUX1-207ENST00000465461 STAMQ92783 540 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 KIFAP3Q92845 792 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 SPATA32Q96LK8 384 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 YME1L1Q96TA2 773 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 RAD9AQ99638 391 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 ZNF576Q9H609 170 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 SLC28A3Q9HAS3 691 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 AGPAT5Q9NUQ2 364 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 MTUS1Q9ULD2 1270 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 LRFN2Q9ULH4 789 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 PCDHB7Q9Y5E2 793 aa12.9□□□□□ -0.34
CUX1-207ENST00000465461 TCHHQ07283 1943 aa12.9□□□□□ -0.35
CUX1-207ENST00000465461 DGKIO75912 1065 aa12.89□□□□□ -0.35
CUX1-207ENST00000465461 ERLIN2O94905 339 aa12.89□□□□□ -0.35
CUX1-207ENST00000465461 GUCY2CP25092 1073 aa12.89□□□□□ -0.35
CUX1-207ENST00000465461 STAT6P42226 847 aa12.89□□□□□ -0.35
CUX1-207ENST00000465461 NAMPTP43490 491 aa12.89□□□□□ -0.35
CUX1-207ENST00000465461 NPTX2P47972 431 aa12.89□□□□□ -0.35
CUX1-207ENST00000465461 FAM189BP81408 668 aa12.89□□□□□ -0.35
CUX1-207ENST00000465461 HTRA4P83105 476 aaPredicted RBP12.89□□□□□ -0.35
CUX1-207ENST00000465461 TAP1Q03518 808 aa12.89□□□□□ -0.35
CUX1-207ENST00000465461 GIT2Q14161 759 aa12.89□□□□□ -0.35
CUX1-207ENST00000465461 UBXN11Q5T124 520 aa12.89□□□□□ -0.35
CUX1-207ENST00000465461 TWF2Q6IBS0 349 aaKnown RBP12.89□□□□□ -0.35
CUX1-207ENST00000465461 ECHDC2Q86YB7 292 aa12.89□□□□□ -0.35
CUX1-207ENST00000465461 IFNLR1Q8IU57 520 aaPredicted RBP12.89□□□□□ -0.35
CUX1-207ENST00000465461 NPAS4Q8IUM7 802 aa12.89□□□□□ -0.35
CUX1-207ENST00000465461 LPPQ93052 612 aa12.89□□□□□ -0.35
CUX1-207ENST00000465461 DHX58Q96C10 678 aa12.89□□□□□ -0.35
CUX1-207ENST00000465461 IFT74Q96LB3 600 aa12.89□□□□□ -0.35
CUX1-207ENST00000465461 REEP2Q9BRK0 252 aa12.89□□□□□ -0.35
CUX1-207ENST00000465461 EIF2AQ9BY44 585 aaKnown RBP12.89□□□□□ -0.35
CUX1-207ENST00000465461 ZHX3Q9H4I2 956 aa12.89□□□□□ -0.35
CUX1-207ENST00000465461 C1orf112Q9NSG2 853 aa12.89□□□□□ -0.35
CUX1-207ENST00000465461 INSL6Q9Y581 213 aa12.89□□□□□ -0.35
CUX1-207ENST00000465461 TTC3P53804 2025 aa12.89□□□□□ -0.35
CUX1-207ENST00000465461 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.88□□□□□ -0.35
CUX1-207ENST00000465461 LINC01553A4QN01 128 aa12.88□□□□□ -0.35
CUX1-207ENST00000465461 EPOPA6NHQ4 379 aa12.88□□□□□ -0.35
CUX1-207ENST00000465461 MYMKA6NI61 221 aa12.88□□□□□ -0.35
CUX1-207ENST00000465461 MEIS3P2A8K0S8 358 aa12.88□□□□□ -0.35
CUX1-207ENST00000465461 SLC16A4O15374 487 aa12.88□□□□□ -0.35
CUX1-207ENST00000465461 KRT18P05783 430 aaKnown RBP12.88□□□□□ -0.35
CUX1-207ENST00000465461 STAG3L1P0CL83 205 aa12.88□□□□□ -0.35
CUX1-207ENST00000465461 ATF7P17544 494 aaPredicted RBP12.88□□□□□ -0.35
CUX1-207ENST00000465461 ARF4P18085 180 aaPredicted RBP12.88□□□□□ -0.35
CUX1-207ENST00000465461 POU5F1BQ06416 359 aa12.88□□□□□ -0.35
CUX1-207ENST00000465461 RESP18Q5W5W9 173 aa12.88□□□□□ -0.35
CUX1-207ENST00000465461 CDCA2Q69YH5 1023 aaPredicted RBP12.88□□□□□ -0.35
CUX1-207ENST00000465461 CCDC73Q6ZRK6 1079 aa12.88□□□□□ -0.35
CUX1-207ENST00000465461 ZBTB8OSQ8IWT0 167 aa12.88□□□□□ -0.35
CUX1-207ENST00000465461 KCTD17Q8N5Z5 321 aa12.88□□□□□ -0.35
CUX1-207ENST00000465461 ARNTL2Q8WYA1 636 aa12.88□□□□□ -0.35
CUX1-207ENST00000465461 ZNF689Q96CS4 500 aaPredicted RBP12.88□□□□□ -0.35
CUX1-207ENST00000465461 GUCD1Q96NT3 240 aa12.88□□□□□ -0.35
CUX1-207ENST00000465461 C17orf80Q9BSJ5 609 aa12.88□□□□□ -0.35
CUX1-207ENST00000465461 PRDM12Q9H4Q4 367 aa12.88□□□□□ -0.35
CUX1-207ENST00000465461 KMT5AQ9NQR1 393 aa12.88□□□□□ -0.35
CUX1-207ENST00000465461 CHST12Q9NRB3 414 aa12.88□□□□□ -0.35
CUX1-207ENST00000465461 TSHZ2Q9NRE2 1034 aa12.88□□□□□ -0.35
CUX1-207ENST00000465461 RNF19AQ9NV58 838 aa12.88□□□□□ -0.35
CUX1-207ENST00000465461 MTMR10Q9NXD2 777 aa12.88□□□□□ -0.35
CUX1-207ENST00000465461 HCSTQ9UBK5 93 aa12.88□□□□□ -0.35
CUX1-207ENST00000465461 ATP6V1DQ9Y5K8 247 aa12.88□□□□□ -0.35
CUX1-207ENST00000465461 COL4A6Q14031 1691 aa12.88□□□□□ -0.35
CUX1-207ENST00000465461 A0A0U1RQF3 1178 aa12.87□□□□□ -0.35
CUX1-207ENST00000465461 A0A1B0GVL5 298 aa12.87□□□□□ -0.35
CUX1-207ENST00000465461 TBKBP1A7MCY6 615 aa12.87□□□□□ -0.35
CUX1-207ENST00000465461 POLR2DO15514 142 aaKnown RBP12.87□□□□□ -0.35
CUX1-207ENST00000465461 PRKCBP05771 671 aa12.87□□□□□ -0.35
CUX1-207ENST00000465461 PLS3P13797 630 aa12.87□□□□□ -0.35
CUX1-207ENST00000465461 DMP1Q13316 513 aaPredicted RBP12.87□□□□□ -0.35
CUX1-207ENST00000465461 PPP2R5AQ15172 486 aa12.87□□□□□ -0.35
CUX1-207ENST00000465461 E2F4Q16254 413 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms