RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 RFXAPO00287 272 aa14.47□□□□□ -0.09
COL28A1-206ENST00000465339 HOXA2O43364 376 aa14.47□□□□□ -0.09
COL28A1-206ENST00000465339 SLC26A4O43511 780 aa14.47□□□□□ -0.09
COL28A1-206ENST00000465339 EOMESO95936 686 aa14.47□□□□□ -0.09
COL28A1-206ENST00000465339 SKIP12755 728 aa14.47□□□□□ -0.09
COL28A1-206ENST00000465339 CYP11B2P19099 503 aa14.47□□□□□ -0.09
COL28A1-206ENST00000465339 CDC25AP30304 524 aa14.47□□□□□ -0.09
COL28A1-206ENST00000465339 PTENP60484 403 aa14.47□□□□□ -0.09
COL28A1-206ENST00000465339 RESTQ13127 1097 aa14.47□□□□□ -0.09
COL28A1-206ENST00000465339 SF3A1Q15459 793 aaKnown RBP14.47□□□□□ -0.09
COL28A1-206ENST00000465339 ECM1Q16610 540 aa14.47□□□□□ -0.09
COL28A1-206ENST00000465339 HYIQ5T013 277 aa14.47□□□□□ -0.09
COL28A1-206ENST00000465339 TMEM192Q8IY95 271 aa14.47□□□□□ -0.09
COL28A1-206ENST00000465339 CLP1Q92989 425 aaKnown RBP14.47□□□□□ -0.09
COL28A1-206ENST00000465339 C17orf80Q9BSJ5 609 aa14.47□□□□□ -0.09
COL28A1-206ENST00000465339 MMTAG2Q9BU76 263 aaKnown RBP14.47□□□□□ -0.09
COL28A1-206ENST00000465339 NFKBIZQ9BYH8 718 aa14.47□□□□□ -0.09
COL28A1-206ENST00000465339 NT5C3AQ9H0P0 336 aa14.47□□□□□ -0.09
COL28A1-206ENST00000465339 BHMT2Q9H2M3 363 aa14.47□□□□□ -0.09
COL28A1-206ENST00000465339 SCUBE2Q9NQ36 999 aa14.47□□□□□ -0.09
COL28A1-206ENST00000465339 MTUS1Q9ULD2 1270 aa14.47□□□□□ -0.09
COL28A1-206ENST00000465339 EPOPA6NHQ4 379 aa14.46□□□□□ -0.09
COL28A1-206ENST00000465339 PP2D1A8MPX8 630 aa14.46□□□□□ -0.09
COL28A1-206ENST00000465339 EYA4O95677 639 aa14.46□□□□□ -0.09
COL28A1-206ENST00000465339 RB1P06400 928 aa14.46□□□□□ -0.09
COL28A1-206ENST00000465339 GLRA2P23416 452 aa14.46□□□□□ -0.09
COL28A1-206ENST00000465339 LONP1P36776 959 aaKnown RBP14.46□□□□□ -0.09
COL28A1-206ENST00000465339 BMPR1AP36894 532 aa14.46□□□□□ -0.09
COL28A1-206ENST00000465339 NCBP1Q09161 790 aaKnown RBP14.46□□□□□ -0.09
COL28A1-206ENST00000465339 GRB10Q13322 594 aa14.46□□□□□ -0.09
COL28A1-206ENST00000465339 CAPSQ13938 189 aa14.46□□□□□ -0.09
COL28A1-206ENST00000465339 EPC2Q52LR7 807 aa14.46□□□□□ -0.09
COL28A1-206ENST00000465339 SPRED2Q7Z698 418 aa14.46□□□□□ -0.09
COL28A1-206ENST00000465339 ECHDC2Q86YB7 292 aa14.46□□□□□ -0.09
COL28A1-206ENST00000465339 ASAP3Q8TDY4 903 aa14.46□□□□□ -0.09
COL28A1-206ENST00000465339 POLR3FQ9H1D9 316 aaPredicted RBP14.46□□□□□ -0.09
COL28A1-206ENST00000465339 CHD7Q9P2D1 2997 aa14.46□□□□□ -0.09
COL28A1-206ENST00000465339 PIN4Q9Y237 131 aaKnown RBP14.46□□□□□ -0.09
COL28A1-206ENST00000465339 E9PMD0 336 aa14.45□□□□□ -0.1
COL28A1-206ENST00000465339 C5orf67F2Z3F1 127 aa14.45□□□□□ -0.1
COL28A1-206ENST00000465339 H3BNC9 293 aa14.45□□□□□ -0.1
COL28A1-206ENST00000465339 LPXNO60711 386 aa14.45□□□□□ -0.1
COL28A1-206ENST00000465339 ERLIN2O94905 339 aa14.45□□□□□ -0.1
COL28A1-206ENST00000465339 IBSPP21815 317 aaPredicted RBP14.45□□□□□ -0.1
COL28A1-206ENST00000465339 AXLP30530 894 aa14.45□□□□□ -0.1
COL28A1-206ENST00000465339 UBA7P41226 1012 aa14.45□□□□□ -0.1
COL28A1-206ENST00000465339 RAB27AP51159 221 aa14.45□□□□□ -0.1
COL28A1-206ENST00000465339 FAM102BQ5T8I3 360 aa14.45□□□□□ -0.1
COL28A1-206ENST00000465339 TWF2Q6IBS0 349 aaKnown RBP14.45□□□□□ -0.1
COL28A1-206ENST00000465339 MAEAQ7L5Y9 396 aa14.45□□□□□ -0.1
COL28A1-206ENST00000465339 RSPH1Q8WYR4 309 aa14.45□□□□□ -0.1
COL28A1-206ENST00000465339 CDK5RAP3Q96JB5 506 aa14.45□□□□□ -0.1
COL28A1-206ENST00000465339 PLVAPQ9BX97 442 aa14.45□□□□□ -0.1
COL28A1-206ENST00000465339 MINDY3Q9H8M7 445 aa14.45□□□□□ -0.1
COL28A1-206ENST00000465339 AGPAT5Q9NUQ2 364 aa14.45□□□□□ -0.1
COL28A1-206ENST00000465339 MTCH2Q9Y6C9 303 aa14.45□□□□□ -0.1
COL28A1-206ENST00000465339 COL4A4P53420 1690 aaPredicted RBP14.45□□□□□ -0.1
COL28A1-206ENST00000465339 PRRC2BQ5JSZ5 2229 aaKnown RBP14.45□□□□□ -0.1
COL28A1-206ENST00000465339 INO80B-WBP1J3KQ70 363 aa14.44□□□□□ -0.1
COL28A1-206ENST00000465339 ZNF623O75123 536 aa14.44□□□□□ -0.1
COL28A1-206ENST00000465339 LINC00271P0C7V0 271 aa14.44□□□□□ -0.1
COL28A1-206ENST00000465339 CTNNB1P35222 781 aa14.44□□□□□ -0.1
COL28A1-206ENST00000465339 PPP2R5AQ15172 486 aa14.44□□□□□ -0.1
COL28A1-206ENST00000465339 ZRSR1Q15695 479 aaKnown RBP14.44□□□□□ -0.1
COL28A1-206ENST00000465339 NAALADL2Q58DX5 795 aa14.44□□□□□ -0.1
COL28A1-206ENST00000465339 ZNF598Q86UK7 904 aaKnown RBP14.44□□□□□ -0.1
COL28A1-206ENST00000465339 CABP7Q86V35 215 aa14.44□□□□□ -0.1
COL28A1-206ENST00000465339 ABI1Q8IZP0 508 aa14.44□□□□□ -0.1
COL28A1-206ENST00000465339 KIFAP3Q92845 792 aa14.44□□□□□ -0.1
COL28A1-206ENST00000465339 CALML4Q96GE6 196 aa14.44□□□□□ -0.1
COL28A1-206ENST00000465339 TMEM117Q9H0C3 514 aa14.44□□□□□ -0.1
COL28A1-206ENST00000465339 GPRC5CQ9NQ84 441 aa14.44□□□□□ -0.1
COL28A1-206ENST00000465339 CLIC4Q9Y696 253 aa14.44□□□□□ -0.1
COL28A1-206ENST00000465339 MRPL42Q9Y6G3 142 aaKnown RBP14.44□□□□□ -0.1
COL28A1-206ENST00000465339 KIAA1671Q9BY89 1806 aa14.43□□□□□ -0.1
COL28A1-206ENST00000465339 MYH15Q9Y2K3 1946 aa14.43□□□□□ -0.1
COL28A1-206ENST00000465339 LRRIQ4A6NIV6 560 aa14.43□□□□□ -0.1
COL28A1-206ENST00000465339 TBKBP1A7MCY6 615 aa14.43□□□□□ -0.1
COL28A1-206ENST00000465339 FGFR1P11362 822 aa14.43□□□□□ -0.1
COL28A1-206ENST00000465339 HOXA11P31270 313 aaPredicted RBP14.43□□□□□ -0.1
COL28A1-206ENST00000465339 GATMP50440 423 aa14.43□□□□□ -0.1
COL28A1-206ENST00000465339 MBTD1Q05BQ5 628 aa14.43□□□□□ -0.1
COL28A1-206ENST00000465339 GPM6BQ13491 265 aa14.43□□□□□ -0.1
COL28A1-206ENST00000465339 PTPAQ15257 358 aa14.43□□□□□ -0.1
COL28A1-206ENST00000465339 PAN2Q504Q3 1202 aaKnown RBP14.43□□□□□ -0.1
COL28A1-206ENST00000465339 FAM173BQ6P4H8 233 aa14.43□□□□□ -0.1
COL28A1-206ENST00000465339 RNF169Q8NCN4 708 aa14.43□□□□□ -0.1
COL28A1-206ENST00000465339 GDPD5Q8WTR4 605 aa14.43□□□□□ -0.1
COL28A1-206ENST00000465339 P2RX5Q93086 422 aa14.43□□□□□ -0.1
COL28A1-206ENST00000465339 PGBD4Q96DM1 585 aa14.43□□□□□ -0.1
COL28A1-206ENST00000465339 CCDC51Q96ER9 411 aa14.43□□□□□ -0.1
COL28A1-206ENST00000465339 IFT74Q96LB3 600 aa14.43□□□□□ -0.1
COL28A1-206ENST00000465339 PNMA5Q96PV4 448 aa14.43□□□□□ -0.1
COL28A1-206ENST00000465339 C11orf84Q9BUA3 381 aaPredicted RBP14.43□□□□□ -0.1
COL28A1-206ENST00000465339 TIPINQ9BVW5 301 aa14.43□□□□□ -0.1
COL28A1-206ENST00000465339 C2orf40Q9H1Z8 148 aa14.43□□□□□ -0.1
COL28A1-206ENST00000465339 AAASQ9NRG9 546 aa14.43□□□□□ -0.1
COL28A1-206ENST00000465339 FAM105AQ9NUU6 356 aa14.43□□□□□ -0.1
COL28A1-206ENST00000465339 DAXXQ9UER7 740 aaPredicted RBP14.43□□□□□ -0.1
COL28A1-206ENST00000465339 BOLA1Q9Y3E2 137 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms