RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 IER5LQ5T953 404 aa18.04■□□□□ 0.48
COL7A1-204ENST00000462475 GLB1LQ6UWU2 654 aa18.04■□□□□ 0.48
COL7A1-204ENST00000462475 NEK8Q86SG6 692 aa18.04■□□□□ 0.48
COL7A1-204ENST00000462475 PRSS33Q8NF86 280 aa18.04■□□□□ 0.48
COL7A1-204ENST00000462475 OXER1Q8TDS5 423 aa18.04■□□□□ 0.48
COL7A1-204ENST00000462475 JPH2Q9BR39 696 aaPredicted RBP18.04■□□□□ 0.48
COL7A1-204ENST00000462475 INO80BQ9C086 356 aaPredicted RBP18.04■□□□□ 0.48
COL7A1-204ENST00000462475 NRDE2Q9H7Z3 1164 aa18.04■□□□□ 0.48
COL7A1-204ENST00000462475 IFT122Q9HBG6 1241 aa18.04■□□□□ 0.48
COL7A1-204ENST00000462475 BMP2KQ9NSY1 1161 aaPredicted RBP18.04■□□□□ 0.48
COL7A1-204ENST00000462475 COL4A3BPQ9Y5P4 624 aa18.04■□□□□ 0.48
COL7A1-204ENST00000462475 STK36Q9NRP7 1315 aa18.03■□□□□ 0.48
COL7A1-204ENST00000462475 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.03■□□□□ 0.48
COL7A1-204ENST00000462475 B4GALT3O60512 393 aa18.03■□□□□ 0.48
COL7A1-204ENST00000462475 CDKL5O76039 1030 aa18.03■□□□□ 0.48
COL7A1-204ENST00000462475 RAB27AP51159 221 aa18.03■□□□□ 0.48
COL7A1-204ENST00000462475 TPRNQ4KMQ1 711 aa18.03■□□□□ 0.48
COL7A1-204ENST00000462475 NOMO2Q5JPE7 1267 aa18.03■□□□□ 0.48
COL7A1-204ENST00000462475 PIK3AP1Q6ZUJ8 805 aa18.03■□□□□ 0.48
COL7A1-204ENST00000462475 VPS52Q8N1B4 723 aa18.03■□□□□ 0.48
COL7A1-204ENST00000462475 SLC7A3Q8WY07 619 aa18.03■□□□□ 0.48
COL7A1-204ENST00000462475 HAS1Q92839 578 aa18.03■□□□□ 0.48
COL7A1-204ENST00000462475 ASIC4Q96FT7 647 aa18.03■□□□□ 0.48
COL7A1-204ENST00000462475 FAM20AQ96MK3 541 aa18.03■□□□□ 0.48
COL7A1-204ENST00000462475 SLKQ9H2G2 1235 aaPredicted RBP18.03■□□□□ 0.48
COL7A1-204ENST00000462475 POMKQ9H5K3 350 aa18.03■□□□□ 0.48
COL7A1-204ENST00000462475 AGPAT5Q9NUQ2 364 aa18.03■□□□□ 0.48
COL7A1-204ENST00000462475 ZDBF2Q9HCK1 2354 aa18.02■□□□□ 0.48
COL7A1-204ENST00000462475 CCNT1O60563 726 aaKnown RBP18.02■□□□□ 0.48
COL7A1-204ENST00000462475 ZNF623O75123 536 aa18.02■□□□□ 0.48
COL7A1-204ENST00000462475 OFD1O75665 1012 aa18.02■□□□□ 0.48
COL7A1-204ENST00000462475 CXCL14O95715 111 aa18.02■□□□□ 0.48
COL7A1-204ENST00000462475 GALTP07902 379 aa18.02■□□□□ 0.48
COL7A1-204ENST00000462475 SKIP12755 728 aa18.02■□□□□ 0.48
COL7A1-204ENST00000462475 GCFC2P16383 781 aaKnown RBP18.02■□□□□ 0.48
COL7A1-204ENST00000462475 POLGP54098 1239 aaPredicted RBP18.02■□□□□ 0.48
COL7A1-204ENST00000462475 EARS2Q5JPH6 523 aaKnown RBP18.02■□□□□ 0.48
COL7A1-204ENST00000462475 PPP4R3AQ6IN85 833 aa18.02■□□□□ 0.48
COL7A1-204ENST00000462475 POTEDQ86YR6 584 aa18.02■□□□□ 0.48
COL7A1-204ENST00000462475 SUGP1Q8IWZ8 645 aaKnown RBP18.02■□□□□ 0.48
COL7A1-204ENST00000462475 FBXL6Q8N531 539 aa18.02■□□□□ 0.48
COL7A1-204ENST00000462475 RSPH1Q8WYR4 309 aa18.02■□□□□ 0.48
COL7A1-204ENST00000462475 TMEM143Q96AN5 459 aa18.02■□□□□ 0.48
COL7A1-204ENST00000462475 IGSF21Q96ID5 467 aa18.02■□□□□ 0.48
COL7A1-204ENST00000462475 CEP170P1Q96L14 293 aa18.02■□□□□ 0.48
COL7A1-204ENST00000462475 LXNQ9BS40 222 aa18.02■□□□□ 0.48
COL7A1-204ENST00000462475 VN1R3Q9BXE9 311 aa18.02■□□□□ 0.48
COL7A1-204ENST00000462475 GBP3Q9H0R5 595 aa18.02■□□□□ 0.48
COL7A1-204ENST00000462475 ADAM7Q9H2U9 754 aa18.02■□□□□ 0.48
COL7A1-204ENST00000462475 DHX33Q9H6R0 707 aaKnown RBP18.02■□□□□ 0.48
COL7A1-204ENST00000462475 MINDY3Q9H8M7 445 aa18.02■□□□□ 0.48
COL7A1-204ENST00000462475 TSHZ2Q9NRE2 1034 aa18.02■□□□□ 0.48
COL7A1-204ENST00000462475 DNAJB4Q9UDY4 337 aa18.02■□□□□ 0.48
COL7A1-204ENST00000462475 TPCN1Q9ULQ1 816 aa18.02■□□□□ 0.48
COL7A1-204ENST00000462475 FAM205CA6NFA0 338 aa18.01■□□□□ 0.47
COL7A1-204ENST00000462475 P4HBP07237 508 aaKnown RBP18.01■□□□□ 0.47
COL7A1-204ENST00000462475 WEE2P0C1S8 567 aa18.01■□□□□ 0.47
COL7A1-204ENST00000462475 CTSAP10619 480 aa18.01■□□□□ 0.47
COL7A1-204ENST00000462475 EPCAMP16422 314 aa18.01■□□□□ 0.47
COL7A1-204ENST00000462475 SLC11A1P49279 550 aa18.01■□□□□ 0.47
COL7A1-204ENST00000462475 RNASELQ05823 741 aaKnown RBP18.01■□□□□ 0.47
COL7A1-204ENST00000462475 CES5AQ6NT32 575 aa18.01■□□□□ 0.47
COL7A1-204ENST00000462475 DDX53Q86TM3 631 aaKnown RBP18.01■□□□□ 0.47
COL7A1-204ENST00000462475 ZNF280BQ86YH2 543 aa18.01■□□□□ 0.47
COL7A1-204ENST00000462475 C12orf76Q8N812 135 aaPredicted RBP18.01■□□□□ 0.47
COL7A1-204ENST00000462475 PRPF31Q8WWY3 499 aaKnown RBP18.01■□□□□ 0.47
COL7A1-204ENST00000462475 PSPC1Q8WXF1 523 aaKnown RBP18.01■□□□□ 0.47
COL7A1-204ENST00000462475 RGL1Q9NZL6 768 aa18.01■□□□□ 0.47
COL7A1-204ENST00000462475 PCDHB2Q9Y5E7 798 aa18.01■□□□□ 0.47
COL7A1-204ENST00000462475 C2CD4DB7Z1M9 353 aa18■□□□□ 0.47
COL7A1-204ENST00000462475 TBX3O15119 743 aa18■□□□□ 0.47
COL7A1-204ENST00000462475 PFKFB2O60825 505 aa18■□□□□ 0.47
COL7A1-204ENST00000462475 DKC1O60832 514 aaKnown RBP eCLIP18■□□□□ 0.47
COL7A1-204ENST00000462475 CTDNEP1O95476 244 aa18■□□□□ 0.47
COL7A1-204ENST00000462475 SRGAP2CP0DJJ0 459 aa18■□□□□ 0.47
COL7A1-204ENST00000462475 YWHABP31946 246 aaKnown RBP18■□□□□ 0.47
COL7A1-204ENST00000462475 AFF1P51825 1210 aaKnown RBP18■□□□□ 0.47
COL7A1-204ENST00000462475 VCPP55072 806 aaKnown RBP18■□□□□ 0.47
COL7A1-204ENST00000462475 ITIH3Q06033 890 aa18■□□□□ 0.47
COL7A1-204ENST00000462475 SPIRE1Q08AE8 756 aa18■□□□□ 0.47
COL7A1-204ENST00000462475 LAMTOR4Q0VGL1 99 aa18■□□□□ 0.47
COL7A1-204ENST00000462475 BMS1Q14692 1282 aaKnown RBP18■□□□□ 0.47
COL7A1-204ENST00000462475 EPHA7Q15375 998 aa18■□□□□ 0.47
COL7A1-204ENST00000462475 UBXN11Q5T124 520 aa18■□□□□ 0.47
COL7A1-204ENST00000462475 RARS2Q5T160 578 aaKnown RBP18■□□□□ 0.47
COL7A1-204ENST00000462475 NCAPH2Q6IBW4 605 aa18■□□□□ 0.47
COL7A1-204ENST00000462475 KANK3Q6NY19 840 aa18■□□□□ 0.47
COL7A1-204ENST00000462475 AGMOQ6ZNB7 445 aa18■□□□□ 0.47
COL7A1-204ENST00000462475 ZBTB33Q86T24 672 aa18■□□□□ 0.47
COL7A1-204ENST00000462475 C4orf19Q8IY42 314 aa18■□□□□ 0.47
COL7A1-204ENST00000462475 FEZF2Q8TBJ5 459 aa18■□□□□ 0.47
COL7A1-204ENST00000462475 NECTIN4Q96NY8 510 aa18■□□□□ 0.47
COL7A1-204ENST00000462475 PHOX2BQ99453 314 aa18■□□□□ 0.47
COL7A1-204ENST00000462475 NR2E1Q9Y466 385 aa18■□□□□ 0.47
COL7A1-204ENST00000462475 PPME1Q9Y570 386 aa18■□□□□ 0.47
COL7A1-204ENST00000462475 IRAK3Q9Y616 596 aa18■□□□□ 0.47
COL7A1-204ENST00000462475 ZBTB39O15060 712 aa17.99■□□□□ 0.47
COL7A1-204ENST00000462475 XBP1P17861 261 aa17.99■□□□□ 0.47
COL7A1-204ENST00000462475 HOXA11P31270 313 aaPredicted RBP17.99■□□□□ 0.47
COL7A1-204ENST00000462475 RFC5P40937 340 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms