RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 GPRC5CQ9NQ84 441 aa12.69□□□□□ -0.38
COL28A1-203ENST00000435823 TMEM161AQ9NX61 479 aa12.69□□□□□ -0.38
COL28A1-203ENST00000435823 SRPRBQ9Y5M8 271 aaKnown RBP12.69□□□□□ -0.38
COL28A1-203ENST00000435823 MYH15Q9Y2K3 1946 aa12.68□□□□□ -0.38
COL28A1-203ENST00000435823 LRRIQ4A6NIV6 560 aa12.68□□□□□ -0.38
COL28A1-203ENST00000435823 SSBP05455 408 aaKnown RBP eCLIP12.68□□□□□ -0.38
COL28A1-203ENST00000435823 AXLP30530 894 aa12.68□□□□□ -0.38
COL28A1-203ENST00000435823 TXLNAP40222 546 aa12.68□□□□□ -0.38
COL28A1-203ENST00000435823 NASPP49321 788 aaPredicted RBP12.68□□□□□ -0.38
COL28A1-203ENST00000435823 FAM189BP81408 668 aa12.68□□□□□ -0.38
COL28A1-203ENST00000435823 SLC39A14Q15043 492 aa12.68□□□□□ -0.38
COL28A1-203ENST00000435823 TMEM119Q4V9L6 283 aa12.68□□□□□ -0.38
COL28A1-203ENST00000435823 ECHDC2Q86YB7 292 aa12.68□□□□□ -0.38
COL28A1-203ENST00000435823 IFNLR1Q8IU57 520 aaPredicted RBP12.68□□□□□ -0.38
COL28A1-203ENST00000435823 CRIPAKQ8N1N5 446 aa12.68□□□□□ -0.38
COL28A1-203ENST00000435823 DEPTORQ8TB45 409 aa12.68□□□□□ -0.38
COL28A1-203ENST00000435823 ZNF689Q96CS4 500 aaPredicted RBP12.68□□□□□ -0.38
COL28A1-203ENST00000435823 TIPINQ9BVW5 301 aa12.68□□□□□ -0.38
COL28A1-203ENST00000435823 NFKBIZQ9BYH8 718 aa12.68□□□□□ -0.38
COL28A1-203ENST00000435823 CSRNP2Q9H175 543 aa12.68□□□□□ -0.38
COL28A1-203ENST00000435823 C2orf40Q9H1Z8 148 aa12.68□□□□□ -0.38
COL28A1-203ENST00000435823 RC3H2Q9HBD1 1191 aaKnown RBP12.68□□□□□ -0.38
COL28A1-203ENST00000435823 AGPAT5Q9NUQ2 364 aa12.68□□□□□ -0.38
COL28A1-203ENST00000435823 CCDC39Q9UFE4 941 aa12.68□□□□□ -0.38
COL28A1-203ENST00000435823 FBXO2Q9UK22 296 aaPredicted RBP12.68□□□□□ -0.38
COL28A1-203ENST00000435823 MTUS1Q9ULD2 1270 aa12.68□□□□□ -0.38
COL28A1-203ENST00000435823 RWDD3Q9Y3V2 267 aa12.68□□□□□ -0.38
COL28A1-203ENST00000435823 MORC2Q9Y6X9 1032 aaPredicted RBP12.68□□□□□ -0.38
COL28A1-203ENST00000435823 CHD9Q3L8U1 2897 aa12.67□□□□□ -0.38
COL28A1-203ENST00000435823 A0A0U1RQF3 1178 aa12.67□□□□□ -0.38
COL28A1-203ENST00000435823 GTPBP6O43824 516 aaPredicted RBP12.67□□□□□ -0.38
COL28A1-203ENST00000435823 EOMESO95936 686 aa12.67□□□□□ -0.38
COL28A1-203ENST00000435823 PLA2G4BP0C869 781 aa12.67□□□□□ -0.38
COL28A1-203ENST00000435823 IGFBP4P22692 258 aa12.67□□□□□ -0.38
COL28A1-203ENST00000435823 NAMPTP43490 491 aa12.67□□□□□ -0.38
COL28A1-203ENST00000435823 RAB27AP51159 221 aa12.67□□□□□ -0.38
COL28A1-203ENST00000435823 GRIN1Q05586 938 aa12.67□□□□□ -0.38
COL28A1-203ENST00000435823 MBTD1Q05BQ5 628 aa12.67□□□□□ -0.38
COL28A1-203ENST00000435823 PAN2Q504Q3 1202 aaKnown RBP12.67□□□□□ -0.38
COL28A1-203ENST00000435823 RINT1Q6NUQ1 792 aa12.67□□□□□ -0.38
COL28A1-203ENST00000435823 KCNK18Q7Z418 384 aa12.67□□□□□ -0.38
COL28A1-203ENST00000435823 ABI1Q8IZP0 508 aa12.67□□□□□ -0.38
COL28A1-203ENST00000435823 KRI1Q8N9T8 703 aaKnown RBP12.67□□□□□ -0.38
COL28A1-203ENST00000435823 RNF169Q8NCN4 708 aa12.67□□□□□ -0.38
COL28A1-203ENST00000435823 DRC1Q96MC2 740 aa12.67□□□□□ -0.38
COL28A1-203ENST00000435823 C17orf80Q9BSJ5 609 aa12.67□□□□□ -0.38
COL28A1-203ENST00000435823 TRAIPQ9BWF2 469 aa12.67□□□□□ -0.38
COL28A1-203ENST00000435823 CCSER1Q9C0I3 900 aa12.67□□□□□ -0.38
COL28A1-203ENST00000435823 MINDY3Q9H8M7 445 aa12.67□□□□□ -0.38
COL28A1-203ENST00000435823 PRMT7Q9NVM4 692 aaPredicted RBP12.67□□□□□ -0.38
COL28A1-203ENST00000435823 KCND2Q9NZV8 630 aa12.67□□□□□ -0.38
COL28A1-203ENST00000435823 SZT2Q5T011 3432 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 TBKBP1A7MCY6 615 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 SPTLC2O15270 562 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 TSPAN1O60635 241 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 HIP1RO75146 1068 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 YEATS4O95619 227 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 FGFR1P11362 822 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 PLCG1P19174 1290 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 GUCY2CP25092 1073 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 CTNNB1P35222 781 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 PKP1Q13835 747 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 KARSQ15046 597 aaKnown RBP12.66□□□□□ -0.38
COL28A1-203ENST00000435823 FOXD4L6Q3SYB3 417 aaPredicted RBP12.66□□□□□ -0.38
COL28A1-203ENST00000435823 EPC2Q52LR7 807 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 CDCA2Q69YH5 1023 aaPredicted RBP12.66□□□□□ -0.38
COL28A1-203ENST00000435823 ATL3Q6DD88 541 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 NOTUMQ6P988 496 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 FOXD4L3Q6VB84 417 aaPredicted RBP12.66□□□□□ -0.38
COL28A1-203ENST00000435823 SPRED2Q7Z698 418 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 TMEM192Q8IY95 271 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 SYT2Q8N9I0 419 aaPredicted RBP12.66□□□□□ -0.38
COL28A1-203ENST00000435823 LINC00301Q8NCQ3 95 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 FBXO22Q8NEZ5 403 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 SYMPKQ92797 1274 aaKnown RBP12.66□□□□□ -0.38
COL28A1-203ENST00000435823 PGBD4Q96DM1 585 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 CCDC51Q96ER9 411 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 RUSC1Q9BVN2 902 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 TMEM117Q9H0C3 514 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 FAM105AQ9NUU6 356 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 TFIP11Q9UBB9 837 aaKnown RBP12.66□□□□□ -0.38
COL28A1-203ENST00000435823 KCNG1Q9UIX4 513 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 CFAP45Q9UL16 551 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 MYO9BQ13459 2157 aa12.66□□□□□ -0.38
COL28A1-203ENST00000435823 RALGAPA2Q2PPJ7 1873 aa12.65□□□□□ -0.38
COL28A1-203ENST00000435823 EPOPA6NHQ4 379 aa12.65□□□□□ -0.38
COL28A1-203ENST00000435823 RFXAPO00287 272 aa12.65□□□□□ -0.38
COL28A1-203ENST00000435823 PPP6R2O75170 966 aa12.65□□□□□ -0.38
COL28A1-203ENST00000435823 RB1P06400 928 aa12.65□□□□□ -0.38
COL28A1-203ENST00000435823 GATMP50440 423 aa12.65□□□□□ -0.38
COL28A1-203ENST00000435823 EFNA5P52803 228 aa12.65□□□□□ -0.38
COL28A1-203ENST00000435823 SLC12A3P55017 1021 aa12.65□□□□□ -0.38
COL28A1-203ENST00000435823 DMP1Q13316 513 aaPredicted RBP12.65□□□□□ -0.38
COL28A1-203ENST00000435823 ADGRE1Q14246 886 aa12.65□□□□□ -0.38
COL28A1-203ENST00000435823 MAPK6Q16659 721 aa12.65□□□□□ -0.38
COL28A1-203ENST00000435823 TMEM132AQ24JP5 1023 aa12.65□□□□□ -0.38
COL28A1-203ENST00000435823 SPECC1Q5M775 1068 aa12.65□□□□□ -0.38
COL28A1-203ENST00000435823 SPOUT1Q5T280 376 aaKnown RBP12.65□□□□□ -0.38
COL28A1-203ENST00000435823 C1orf186Q6ZWK4 172 aa12.65□□□□□ -0.38
COL28A1-203ENST00000435823 ZNF598Q86UK7 904 aaKnown RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms