RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 ALS2CLQ60I27 953 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 PHF20Q9BVI0 1012 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.55□□□□□ -0.72
USP54-205ENST00000424265 SRPRBQ9Y5M8 271 aaKnown RBP10.55□□□□□ -0.72
USP54-205ENST00000424265 TPPPO94811 219 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 NAT2P11245 290 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 VDRP11473 427 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 GUCY1A3Q02108 690 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 GABPAQ06546 454 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 RIOX1Q9H6W3 641 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 ZNF180Q9UJW8 692 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 DDX60Q8IY21 1712 aaKnown RBP10.55□□□□□ -0.72
USP54-205ENST00000424265 A0A1B0GVG6 124 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 DPPA5A6NC42 116 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 NPTXRO95502 500 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 GSTA2P09210 222 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 KCNA3P22001 575 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 PDE6CP51160 858 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 ZNF577Q9BSK1 485 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 MAK16Q9BXY0 300 aaKnown RBP10.55□□□□□ -0.72
USP54-205ENST00000424265 ZMYND12Q9H0C1 365 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 RAVER2Q9HCJ3 691 aaKnown RBP10.55□□□□□ -0.72
USP54-205ENST00000424265 HPS5Q9UPZ3 1129 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 ARIH1Q9Y4X5 557 aaPredicted RBP10.55□□□□□ -0.72
USP54-205ENST00000424265 STX10O60499 249 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 FAM107AO95990 144 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 MTTPP55157 894 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 PTGISQ16647 500 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 STAG2Q8N3U4 1231 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 LINC00301Q8NCQ3 95 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 RAB3IPQ96QF0 476 aaPredicted RBP10.55□□□□□ -0.72
USP54-205ENST00000424265 MMP19Q99542 508 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 CROTQ9UKG9 612 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 MTUS1Q9ULD2 1270 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 PPP1R9AQ9ULJ8 1098 aa10.55□□□□□ -0.72
USP54-205ENST00000424265 KRT14P02533 472 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 AFMP43652 599 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 SERPINB4P48594 390 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 MLKLQ8NB16 471 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 CCDC110Q8TBZ0 833 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 CYFIP2Q96F07 1278 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 MROH8Q9H579 483 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 JMJD4Q9H9V9 463 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 PHF24Q9UPV7 400 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 ABLIM1O14639 778 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 SFNP31947 248 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 TMED10P49755 219 aaKnown RBP10.54□□□□□ -0.72
USP54-205ENST00000424265 TAF1CQ15572 869 aaPredicted RBP10.54□□□□□ -0.72
USP54-205ENST00000424265 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.54□□□□□ -0.72
USP54-205ENST00000424265 MOXD1Q6UVY6 613 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 PHLDB2Q86SQ0 1253 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 LONP2Q86WA8 852 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 MORC4Q8TE76 937 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 L3MBTL3Q96JM7 780 aaPredicted RBP10.54□□□□□ -0.72
USP54-205ENST00000424265 ZMYND10O75800 440 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 KRT76Q01546 638 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 GPRC5AQ8NFJ5 357 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 RMDN3Q96TC7 470 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 AP5M1Q9H0R1 490 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 TAF1LQ8IZX4 1826 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 LGR5O75473 907 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 MMEP08473 750 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 VAV2P52735 878 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 PDE1BQ01064 536 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 PAK2Q13177 524 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 P3H1Q32P28 736 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 FAM133BQ5BKY9 247 aaKnown RBP10.54□□□□□ -0.72
USP54-205ENST00000424265 TRPM4Q8TD43 1214 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 CPLX3Q8WVH0 158 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 FAM167AQ96KS9 214 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 NUP88Q99567 741 aaPredicted RBP10.54□□□□□ -0.72
USP54-205ENST00000424265 EBF2Q9HAK2 575 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 TUBGCP4Q9UGJ1 667 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 GGA2Q9UJY4 613 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 N6AMT1Q9Y5N5 214 aa10.54□□□□□ -0.72
USP54-205ENST00000424265 SMIM23A6NLE4 172 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 MSL3P1P0C860 447 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 HDAC4P56524 1084 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 LONRF3Q496Y0 759 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 NOL9Q5SY16 702 aaKnown RBP10.53□□□□□ -0.72
USP54-205ENST00000424265 DHX40Q8IX18 779 aaKnown RBP10.53□□□□□ -0.72
USP54-205ENST00000424265 SLC39A3Q9BRY0 314 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 PCDH18Q9HCL0 1135 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 GMNCA6NCL1 334 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 ARHGAP4P98171 946 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 GOLGA8FQ08AF8 430 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 GOLGA8DPQ0D2H9 430 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 SMYD1Q8NB12 490 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 MYCBPAPQ8TBZ2 947 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 UBE2OQ9C0C9 1292 aaKnown RBP10.53□□□□□ -0.72
USP54-205ENST00000424265 POLR2DO15514 142 aaKnown RBP10.53□□□□□ -0.72
USP54-205ENST00000424265 PRPF6O94906 941 aaKnown RBP10.53□□□□□ -0.72
USP54-205ENST00000424265 SKIP12755 728 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 FAM173BQ6P4H8 233 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 SIX5Q8N196 739 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 SPIRE2Q8WWL2 714 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 TRIM47Q96LD4 638 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 MRGBPQ9NV56 204 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 CIDEBQ9UHD4 219 aa10.53□□□□□ -0.72
USP54-205ENST00000424265 FAF1Q9UNN5 650 aaPredicted RBP10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms