RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 SNX1Q13596 522 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 SGSM1Q2NKQ1 1148 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 DCAF17Q5H9S7 520 aaPredicted RBP11.53□□□□□ -0.56
USP54-204ENST00000422491 GPBP1Q86WP2 473 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 ZNF444Q8N0Y2 327 aaPredicted RBP11.53□□□□□ -0.56
USP54-204ENST00000422491 STK32AQ8WU08 396 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 CTNNBL1Q8WYA6 563 aaPredicted RBP11.53□□□□□ -0.56
USP54-204ENST00000422491 SLC35C1Q96A29 364 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 SERPINB12Q96P63 405 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 NT5C3AQ9H0P0 336 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 LRMDAQ9H2I8 198 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 KLHL14Q9P2G3 628 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 MINPP1Q9UNW1 487 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 KAT6BQ8WYB5 2073 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 TAF1P21675 1872 aa11.53□□□□□ -0.56
USP54-204ENST00000422491 GNAT1P11488 350 aa11.52□□□□□ -0.56
USP54-204ENST00000422491 TRAF1Q13077 416 aa11.52□□□□□ -0.56
USP54-204ENST00000422491 LBRQ14739 615 aaKnown RBP11.52□□□□□ -0.56
USP54-204ENST00000422491 GNPTABQ3T906 1256 aa11.52□□□□□ -0.56
USP54-204ENST00000422491 ARSHQ5FYA8 562 aa11.52□□□□□ -0.56
USP54-204ENST00000422491 CNBD1Q8NA66 436 aa11.52□□□□□ -0.56
USP54-204ENST00000422491 SLC17A8Q8NDX2 589 aa11.52□□□□□ -0.56
USP54-204ENST00000422491 TGS1Q96RS0 853 aaKnown RBP11.52□□□□□ -0.56
USP54-204ENST00000422491 SYT15Q9BQS2 421 aa11.52□□□□□ -0.56
USP54-204ENST00000422491 DDX23Q9BUQ8 820 aaKnown RBP11.52□□□□□ -0.56
USP54-204ENST00000422491 BSDC1Q9NW68 430 aaPredicted RBP11.52□□□□□ -0.56
USP54-204ENST00000422491 CYP39A1Q9NYL5 469 aa11.52□□□□□ -0.56
USP54-204ENST00000422491 KIAA1024Q9UPX6 916 aa11.52□□□□□ -0.56
USP54-204ENST00000422491 KDM3AQ9Y4C1 1321 aa11.52□□□□□ -0.57
USP54-204ENST00000422491 SNED1Q8TER0 1413 aa11.52□□□□□ -0.57
USP54-204ENST00000422491 LRRD1A4D1F6 860 aa11.52□□□□□ -0.57
USP54-204ENST00000422491 HGSO14964 777 aaPredicted RBP11.52□□□□□ -0.57
USP54-204ENST00000422491 STAT1P42224 750 aa11.52□□□□□ -0.57
USP54-204ENST00000422491 RAD23BP54727 409 aa11.52□□□□□ -0.57
USP54-204ENST00000422491 RRP1BQ14684 758 aaKnown RBP11.52□□□□□ -0.57
USP54-204ENST00000422491 MTFR1Q15390 333 aa11.52□□□□□ -0.57
USP54-204ENST00000422491 KNOP1Q1ED39 458 aaKnown RBP11.52□□□□□ -0.57
USP54-204ENST00000422491 CCDC137Q6PK04 289 aaKnown RBP11.52□□□□□ -0.57
USP54-204ENST00000422491 TRMT10CQ7L0Y3 403 aaKnown RBP11.52□□□□□ -0.57
USP54-204ENST00000422491 APLFQ8IW19 511 aaPredicted RBP11.52□□□□□ -0.57
USP54-204ENST00000422491 ANKRD42Q8N9B4 389 aa11.52□□□□□ -0.57
USP54-204ENST00000422491 GDAP1Q8TB36 358 aa11.52□□□□□ -0.57
USP54-204ENST00000422491 PIGOQ8TEQ8 1089 aa11.52□□□□□ -0.57
USP54-204ENST00000422491 FBF1Q8TES7 1133 aa11.52□□□□□ -0.57
USP54-204ENST00000422491 THAP2Q9H0W7 228 aa11.52□□□□□ -0.57
USP54-204ENST00000422491 CDC42EP4Q9H3Q1 356 aaKnown RBP11.52□□□□□ -0.57
USP54-204ENST00000422491 TXLNGQ9NUQ3 528 aa11.52□□□□□ -0.57
USP54-204ENST00000422491 GTPBP10A4D1E9 387 aaKnown RBP11.51□□□□□ -0.57
USP54-204ENST00000422491 TP73O15350 636 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 SMIM24O75264 130 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 RTN3O95197 1032 aaPredicted RBP11.51□□□□□ -0.57
USP54-204ENST00000422491 SOX5P35711 763 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 ADCY7P51828 1080 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 SLC5A9Q2M3M2 681 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 EPM2AIP1Q7L775 607 aaPredicted RBP11.51□□□□□ -0.57
USP54-204ENST00000422491 LMNTD2Q8IXW0 634 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 GALNT15Q8N3T1 639 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 ENDOVQ8N8Q3 282 aaKnown RBP11.51□□□□□ -0.57
USP54-204ENST00000422491 KRT35Q92764 455 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 RIOX1Q9H6W3 641 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 AAASQ9NRG9 546 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 USP40Q9NVE5 1235 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 CTNNAL1Q9UBT7 734 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 DDX25Q9UHL0 483 aaKnown RBP11.51□□□□□ -0.57
USP54-204ENST00000422491 PITPNM2Q9BZ72 1349 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 POTEB3A0JP26 581 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 FOXO6A8MYZ6 492 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 POTECB2RU33 542 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 hCG_1984214I3L0E3 225 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 IRF6O14896 467 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 CAMTA2O94983 1202 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 GCLCP48506 637 aaPredicted RBP11.51□□□□□ -0.57
USP54-204ENST00000422491 MARCKSL1P49006 195 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 CYP1B1Q16678 543 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 TCERG1LQ5VWI1 586 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 POTEBQ6S5H4 581 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 CYFIP1Q7L576 1253 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 ZNF713Q8N859 430 aaPredicted RBP11.51□□□□□ -0.57
USP54-204ENST00000422491 FAM13CQ8NE31 585 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 ASAP3Q8TDY4 903 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 ZFAND2BQ8WV99 257 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 COA7Q96BR5 231 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 MAGEB18Q96M61 343 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 UBA5Q9GZZ9 404 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 MYLK2Q9H1R3 596 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 TAS2R14Q9NYV8 317 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 PCDHA12Q9UN75 941 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 ALG6Q9Y672 507 aa11.51□□□□□ -0.57
USP54-204ENST00000422491 ACADSP16219 412 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 ATP5DP30049 168 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 PCK1P35558 622 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 CASP4P49662 377 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 PEX5P50542 639 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 SLC12A3P55017 1021 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 HADHBP55084 474 aaKnown RBP11.5□□□□□ -0.57
USP54-204ENST00000422491 MXRA7P84157 204 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 LMNB2Q03252 620 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 RNASELQ05823 741 aaKnown RBP11.5□□□□□ -0.57
USP54-204ENST00000422491 C3orf67Q6ZVT6 689 aa11.5□□□□□ -0.57
USP54-204ENST00000422491 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 831.2 ms