RNA–Protein interactions for RNA: ENST00000414700.7

SHMT2-202, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 2,006 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-202ENST00000414700 CT47A1Q5JQC4 288 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-202ENST00000414700 NFRKBQ6P4R8 1299 aa17.06■□□□□ 0.32
SHMT2-202ENST00000414700 RNF180Q86T96 592 aa17.06■□□□□ 0.32
SHMT2-202ENST00000414700 RHPN2Q8IUC4 686 aa17.06■□□□□ 0.32
SHMT2-202ENST00000414700 IFT74Q96LB3 600 aa17.06■□□□□ 0.32
SHMT2-202ENST00000414700 KATNAL1Q9BW62 490 aa17.06■□□□□ 0.32
SHMT2-202ENST00000414700 PAK6Q9NQU5 681 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-202ENST00000414700 SUCLA2Q9P2R7 463 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-202ENST00000414700 GRIN2DO15399 1336 aa17.06■□□□□ 0.32
SHMT2-202ENST00000414700 LRRIQ4A6NIV6 560 aa17.05■□□□□ 0.32
SHMT2-202ENST00000414700 EIF3DO15371 548 aaKnown RBP eCLIP17.05■□□□□ 0.32
SHMT2-202ENST00000414700 TREHO43280 583 aa17.05■□□□□ 0.32
SHMT2-202ENST00000414700 KPNA6O60684 536 aa17.05■□□□□ 0.32
SHMT2-202ENST00000414700 VTNP04004 478 aa17.05■□□□□ 0.32
SHMT2-202ENST00000414700 CDK11BP21127 795 aaKnown RBP17.05■□□□□ 0.32
SHMT2-202ENST00000414700 FAM193AP78312 1265 aa17.05■□□□□ 0.32
SHMT2-202ENST00000414700 LAMTOR4Q0VGL1 99 aa17.05■□□□□ 0.32
SHMT2-202ENST00000414700 TERF2Q15554 542 aa17.05■□□□□ 0.32
SHMT2-202ENST00000414700 KNOP1Q1ED39 458 aaKnown RBP17.05■□□□□ 0.32
SHMT2-202ENST00000414700 SPATA1Q5VX52 437 aa17.05■□□□□ 0.32
SHMT2-202ENST00000414700 IER5Q5VY09 327 aa17.05■□□□□ 0.32
SHMT2-202ENST00000414700 TAS1R3Q7RTX0 852 aa17.05■□□□□ 0.32
SHMT2-202ENST00000414700 KRT222Q8N1A0 295 aa17.05■□□□□ 0.32
SHMT2-202ENST00000414700 CCDC112Q8NEF3 446 aa17.05■□□□□ 0.32
SHMT2-202ENST00000414700 SPIRE2Q8WWL2 714 aa17.05■□□□□ 0.32
SHMT2-202ENST00000414700 PSPC1Q8WXF1 523 aaKnown RBP17.05■□□□□ 0.32
SHMT2-202ENST00000414700 ARHGAP28Q9P2N2 729 aa17.05■□□□□ 0.32
SHMT2-202ENST00000414700 USP20Q9Y2K6 914 aa17.05■□□□□ 0.32
SHMT2-202ENST00000414700 DENND3A2RUS2 1198 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 TISP43B9A030 160 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 GAS2O43903 313 aaKnown RBP17.04■□□□□ 0.32
SHMT2-202ENST00000414700 ZEB2O60315 1214 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 SRGAP2CP0DJJ0 459 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 MAPTP10636 758 aaKnown RBP17.04■□□□□ 0.32
SHMT2-202ENST00000414700 CCL5P13501 91 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 ACLYP53396 1101 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 SMTNP53814 917 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 GTF2BQ00403 316 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 RUFY4Q6ZNE9 571 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 C7orf31Q8N865 590 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 RETREG2Q8NC44 543 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 DEFB118Q96PH6 123 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 RNF208Q9H0X6 261 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 MBLAC1A4D2B0 266 aaPredicted RBP17.04■□□□□ 0.32
SHMT2-202ENST00000414700 MAGEB2O15479 319 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 TGFB1I1O43294 461 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 TNNT1P13805 278 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 HOXC8P31273 242 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 PPP1R2P41236 205 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 NAMPTP43490 491 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 CTCFP49711 727 aaPredicted RBP17.04■□□□□ 0.32
SHMT2-202ENST00000414700 EXOC8Q8IYI6 725 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 KIAA0319LQ8IZA0 1049 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 PCSK9Q8NBP7 692 aaKnown RBP17.04■□□□□ 0.32
SHMT2-202ENST00000414700 RNF149Q8NC42 400 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 TCP11Q8WWU5 503 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 NLRP4Q96MN2 994 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 JPH2Q9BR39 696 aaPredicted RBP17.04■□□□□ 0.32
SHMT2-202ENST00000414700 ST6GALNAC4Q9H4F1 302 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 PCDHB13Q9Y5F0 798 aa17.04■□□□□ 0.32
SHMT2-202ENST00000414700 SIP14410 1827 aa17.03■□□□□ 0.32
SHMT2-202ENST00000414700 RRN3P2A6NIE6 340 aa17.03■□□□□ 0.32
SHMT2-202ENST00000414700 IRF2BP1Q8IU81 584 aa17.03■□□□□ 0.32
SHMT2-202ENST00000414700 CSGALNACT2Q8N6G5 542 aa17.03■□□□□ 0.32
SHMT2-202ENST00000414700 ZNF397Q8NF99 534 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-202ENST00000414700 C16orf45Q96MC5 204 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-202ENST00000414700 SRRTQ9BXP5 876 aaKnown RBP17.03■□□□□ 0.32
SHMT2-202ENST00000414700 FAM49AQ9H0Q0 323 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-202ENST00000414700 GTF2IRD1Q9UHL9 959 aa17.03■□□□□ 0.32
SHMT2-202ENST00000414700 TBX20Q9UMR3 447 aa17.03■□□□□ 0.32
SHMT2-202ENST00000414700 AKT3Q9Y243 479 aa17.03■□□□□ 0.32
SHMT2-202ENST00000414700 EDN1P05305 212 aa17.03■□□□□ 0.32
SHMT2-202ENST00000414700 ZNF18P17022 549 aa17.03■□□□□ 0.32
SHMT2-202ENST00000414700 DNM2P50570 870 aa17.03■□□□□ 0.32
SHMT2-202ENST00000414700 SLC20A2Q08357 652 aa17.03■□□□□ 0.32
SHMT2-202ENST00000414700 TMEM62Q0P6H9 643 aa17.03■□□□□ 0.32
SHMT2-202ENST00000414700 MXD4Q14582 209 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-202ENST00000414700 TPD52L1Q16890 204 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-202ENST00000414700 FAM47CQ5HY64 1035 aa17.03■□□□□ 0.32
SHMT2-202ENST00000414700 GDF6Q6KF10 455 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-202ENST00000414700 FBXO46Q6PJ61 603 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-202ENST00000414700 CREBRFQ8IUR6 639 aa17.03■□□□□ 0.32
SHMT2-202ENST00000414700 BICDL2A1A5D9 508 aa17.02■□□□□ 0.32
SHMT2-202ENST00000414700 C17orf102A2RUQ5 167 aa17.02■□□□□ 0.32
SHMT2-202ENST00000414700 CLIC2O15247 247 aa17.02■□□□□ 0.32
SHMT2-202ENST00000414700 CSDE1O75534 798 aaKnown RBP17.02■□□□□ 0.32
SHMT2-202ENST00000414700 LRRC63Q05C16 580 aa17.02■□□□□ 0.32
SHMT2-202ENST00000414700 PPP2R5AQ15172 486 aa17.02■□□□□ 0.32
SHMT2-202ENST00000414700 CDKAL1Q5VV42 579 aa17.02■□□□□ 0.32
SHMT2-202ENST00000414700 LRRC55Q6ZSA7 311 aa17.02■□□□□ 0.32
SHMT2-202ENST00000414700 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.02■□□□□ 0.32
SHMT2-202ENST00000414700 DEPTORQ8TB45 409 aa17.02■□□□□ 0.32
SHMT2-202ENST00000414700 CYP2C9P11712 490 aa17.01■□□□□ 0.31
SHMT2-202ENST00000414700 TMOD1P28289 359 aa17.01■□□□□ 0.31
SHMT2-202ENST00000414700 STXBP4Q6ZWJ1 553 aa17.01■□□□□ 0.31
SHMT2-202ENST00000414700 CCDC186Q7Z3E2 898 aa17.01■□□□□ 0.31
SHMT2-202ENST00000414700 VTI1AQ96AJ9 217 aa17.01■□□□□ 0.31
SHMT2-202ENST00000414700 ZNF333Q96JL9 665 aa17.01■□□□□ 0.31
SHMT2-202ENST00000414700 MINDY3Q9H8M7 445 aa17.01■□□□□ 0.31
SHMT2-202ENST00000414700 IFT122Q9HBG6 1241 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms