RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 ELF3P78545 371 aaPredicted RBP6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 MRPS25P82663 173 aaKnown RBP6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 ARHGAP4P98171 946 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 CAV1Q03135 178 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 ACVR2BQ13705 512 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 RNF187Q5TA31 235 aaPredicted RBP6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 DENND2CQ68D51 928 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 JAMLQ86YT9 394 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 UBL4BQ8N7F7 174 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 LMO3Q8TAP4 145 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 GMCL1Q96IK5 515 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 DEFB129Q9H1M3 183 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 TAOK3Q9H2K8 898 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 LRRC19Q9H756 370 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 WHRNQ9P202 907 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 ANKIB1Q9P2G1 1089 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 TPX2Q9ULW0 747 aaKnown RBP6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 ACTN1P12814 892 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 PEX5P50542 639 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 CEP128Q6ZU80 1094 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 C1orf186Q6ZWK4 172 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 CPLX4Q7Z7G2 160 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 DDX42Q86XP3 938 aaKnown RBP eCLIP6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 GPIHBP1Q8IV16 184 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 NELFCDQ8IXH7 590 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 FIZ1Q96SL8 496 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 HSD17B14Q9BPX1 270 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 ZSWIM1Q9BR11 485 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 JPH2Q9BR39 696 aaPredicted RBP6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 AP1M1Q9BXS5 423 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 FOXP3Q9BZS1 431 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 ST6GALNAC4Q9H4F1 302 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 HAUS2Q9NVX0 235 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 GGA1Q9UJY5 639 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 AJAP1Q9UKB5 411 aaPredicted RBP6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 PPP1R9AQ9ULJ8 1098 aa6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 RPL26L1Q9UNX3 145 aaKnown RBP6.2□□□□□ -1.42
CCDC88A-203ENST00000412148 FRMPD2Q68DX3 1309 aaPredicted RBP6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 CAND2O75155 1236 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 GJB6O95452 261 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 ATP6V1G2O95670 118 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 KRT18P05783 430 aaKnown RBP6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 CHN1P15882 459 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 GPSM2P81274 684 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 PTP4A2Q12974 167 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 UBE2SQ16763 222 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 ODF2Q5BJF6 829 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 RHBDF2Q6PJF5 856 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 B3GNT9Q6UX72 402 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 TRPM8Q7Z2W7 1104 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 FAM186BQ8IYM0 893 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 OR2W6PQ8NHA6 318 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 GIMAP7Q8NHV1 300 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 TBC1D16Q8TBP0 767 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 SH3TC2Q8TF17 1288 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 C7orf43Q8WVR3 580 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 MAIP1Q8WWC4 291 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 GRAMD1AQ96CP6 724 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 CCDC97Q96F63 343 aaPredicted RBP6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 HINFPQ9BQA5 517 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 COA1Q9GZY4 146 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 VEZTQ9HBM0 779 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 VAT1LQ9HCJ6 419 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 KCNQ5Q9NR82 932 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 HOMER3Q9NSC5 361 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 LGALS13Q9UHV8 139 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 RTCBQ9Y3I0 505 aaKnown RBP6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 RIPK2O43353 540 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 MARCH6O60337 910 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 SNX3O60493 162 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 CTNND1O60716 968 aaKnown RBP6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 RTN2O75298 545 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 TBCAO75347 108 aaKnown RBP6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 MMEP08473 750 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 BCRP11274 1271 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 TMOD1P28289 359 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 NF2P35240 595 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 RFC4P35249 363 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 CTTNQ14247 550 aaKnown RBP6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 DRAP1Q14919 205 aaPredicted RBP6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 RASA2Q15283 850 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 SIX1Q15475 284 aaPredicted RBP6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 QRICH1Q2TAL8 776 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 MFSD14BQ5SR56 506 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 RINT1Q6NUQ1 792 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 POTEGQ6S5H5 508 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 RGS9BPQ6ZS82 235 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 RIBC1Q8N443 379 aaPredicted RBP6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 PRELID2Q8N945 189 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 U2AF1L4Q8WU68 220 aaKnown RBP6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 SLC5A5Q92911 643 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 ACSBG1Q96GR2 724 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 TIPINQ9BVW5 301 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 AMNQ9BXJ7 453 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 SAMD15Q9P1V8 674 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 UVRAGQ9P2Y5 699 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 CTNNAL1Q9UBT7 734 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 PRKAG3Q9UGI9 489 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 DNAJC12Q9UKB3 198 aa6.19□□□□□ -1.42
CCDC88A-203ENST00000412148 RABGAP1Q9Y3P9 1069 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms