RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 METTL5Q9NRN9 209 aaKnown RBP13.97□□□□□ -0.17
PTPRN-202ENST00000409251 SLC12A6Q9UHW9 1150 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 PCDHA12Q9UN75 941 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 KIAA1024Q9UPX6 916 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 SCN9AQ15858 1988 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 COL24A1Q17RW2 1714 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 POTEB3A0JP26 581 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 POTECB2RU33 542 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 CLIC2O15247 247 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 NEFHP12036 1026 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 BIRC3Q13489 604 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 POTEBQ6S5H4 581 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 C6orf89Q6UWU4 347 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 FBF1Q8TES7 1133 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 ZNF570Q96NI8 536 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 SEMA4AQ9H3S1 761 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 A1CFQ9NQ94 594 aaKnown RBP13.97□□□□□ -0.17
PTPRN-202ENST00000409251 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.97□□□□□ -0.17
PTPRN-202ENST00000409251 ZNRF3Q9ULT6 936 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 DAAM1Q9Y4D1 1078 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 USH1CQ9Y6N9 552 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 SERPING1P05155 500 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 ATP2A2P16615 1042 aaKnown RBP13.97□□□□□ -0.17
PTPRN-202ENST00000409251 HSPA9P38646 679 aaKnown RBP13.97□□□□□ -0.17
PTPRN-202ENST00000409251 MTMR3Q13615 1198 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 TMEM179Q6ZVK1 233 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 INTS8Q75QN2 995 aaKnown RBP13.97□□□□□ -0.17
PTPRN-202ENST00000409251 MICALL2Q8IY33 904 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 NEK9Q8TD19 979 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 SH3GL3Q99963 347 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 ROBO3Q96MS0 1386 aa13.97□□□□□ -0.17
PTPRN-202ENST00000409251 TLR2O60603 784 aa13.96□□□□□ -0.17
PTPRN-202ENST00000409251 ADAM9Q13443 819 aa13.96□□□□□ -0.17
PTPRN-202ENST00000409251 MTM1Q13496 603 aa13.96□□□□□ -0.17
PTPRN-202ENST00000409251 ECM1Q16610 540 aa13.96□□□□□ -0.17
PTPRN-202ENST00000409251 MUM1Q2TAK8 710 aa13.96□□□□□ -0.17
PTPRN-202ENST00000409251 ANKRD20A2Q5SQ80 823 aa13.96□□□□□ -0.17
PTPRN-202ENST00000409251 ANKRD20A1Q5TYW2 823 aa13.96□□□□□ -0.17
PTPRN-202ENST00000409251 ANKRD20A3Q5VUR7 823 aa13.96□□□□□ -0.17
PTPRN-202ENST00000409251 RTKN2Q8IZC4 609 aa13.96□□□□□ -0.17
PTPRN-202ENST00000409251 TAB3Q8N5C8 712 aaPredicted RBP13.96□□□□□ -0.17
PTPRN-202ENST00000409251 SUPT20HQ8NEM7 779 aa13.96□□□□□ -0.17
PTPRN-202ENST00000409251 CCDC17Q96LX7 622 aa13.96□□□□□ -0.17
PTPRN-202ENST00000409251 ERGIC2Q96RQ1 377 aa13.96□□□□□ -0.17
PTPRN-202ENST00000409251 ZBTB39O15060 712 aa13.96□□□□□ -0.17
PTPRN-202ENST00000409251 CNGA1P29973 690 aa13.96□□□□□ -0.17
PTPRN-202ENST00000409251 STX2P32856 288 aa13.96□□□□□ -0.17
PTPRN-202ENST00000409251 SSR1P43307 286 aaKnown RBP13.96□□□□□ -0.17
PTPRN-202ENST00000409251 ZNF131P52739 623 aa13.96□□□□□ -0.17
PTPRN-202ENST00000409251 DR1Q01658 176 aa13.96□□□□□ -0.17
PTPRN-202ENST00000409251 PLCB4Q15147 1175 aa13.96□□□□□ -0.17
PTPRN-202ENST00000409251 TMEM266Q2M3C6 531 aa13.96□□□□□ -0.17
PTPRN-202ENST00000409251 MYOCDQ8IZQ8 938 aa13.96□□□□□ -0.17
PTPRN-202ENST00000409251 DTX3LQ8TDB6 740 aa13.96□□□□□ -0.17
PTPRN-202ENST00000409251 POTEFA5A3E0 1075 aa13.96□□□□□ -0.18
PTPRN-202ENST00000409251 POTEIP0CG38 1075 aa13.96□□□□□ -0.18
PTPRN-202ENST00000409251 PABPC4Q13310 644 aaKnown RBP eCLIP13.96□□□□□ -0.18
PTPRN-202ENST00000409251 GPATCH4Q5T3I0 446 aaKnown RBP13.96□□□□□ -0.18
PTPRN-202ENST00000409251 SYDE2Q5VT97 1194 aa13.96□□□□□ -0.18
PTPRN-202ENST00000409251 KRT79Q5XKE5 535 aa13.96□□□□□ -0.18
PTPRN-202ENST00000409251 POTEGQ6S5H5 508 aa13.96□□□□□ -0.18
PTPRN-202ENST00000409251 POTEEQ6S8J3 1075 aa13.96□□□□□ -0.18
PTPRN-202ENST00000409251 ISLR2Q6UXK2 745 aa13.96□□□□□ -0.18
PTPRN-202ENST00000409251 LARP4BQ92615 738 aaKnown RBP13.96□□□□□ -0.18
PTPRN-202ENST00000409251 HOOK2Q96ED9 719 aa13.96□□□□□ -0.18
PTPRN-202ENST00000409251 AGBL1Q96MI9 1066 aa13.96□□□□□ -0.18
PTPRN-202ENST00000409251 INPP4AQ96PE3 977 aaPredicted RBP13.96□□□□□ -0.18
PTPRN-202ENST00000409251 FAM118BQ9BPY3 351 aa13.96□□□□□ -0.18
PTPRN-202ENST00000409251 ANO3Q9BYT9 981 aa13.96□□□□□ -0.18
PTPRN-202ENST00000409251 CTNNAL1Q9UBT7 734 aa13.96□□□□□ -0.18
PTPRN-202ENST00000409251 PRR12Q9ULL5 1215 aa13.96□□□□□ -0.18
PTPRN-202ENST00000409251 SIK3Q9Y2K2 1263 aa13.96□□□□□ -0.18
PTPRN-202ENST00000409251 SUGT1Q9Y2Z0 365 aa13.96□□□□□ -0.18
PTPRN-202ENST00000409251 F8VZ95 297 aa13.95□□□□□ -0.18
PTPRN-202ENST00000409251 NQO1P15559 274 aaKnown RBP13.95□□□□□ -0.18
PTPRN-202ENST00000409251 MSH2P43246 934 aa13.95□□□□□ -0.18
PTPRN-202ENST00000409251 TRAPPC10P48553 1259 aa13.95□□□□□ -0.18
PTPRN-202ENST00000409251 GMPSP49915 693 aaPredicted RBP13.95□□□□□ -0.18
PTPRN-202ENST00000409251 TMC3Q7Z5M5 1100 aa13.95□□□□□ -0.18
PTPRN-202ENST00000409251 PIGOQ8TEQ8 1089 aa13.95□□□□□ -0.18
PTPRN-202ENST00000409251 DLGAP2Q9P1A6 1054 aa13.95□□□□□ -0.18
PTPRN-202ENST00000409251 NID2Q14112 1375 aa13.95□□□□□ -0.18
PTPRN-202ENST00000409251 LRRD1A4D1F6 860 aa13.95□□□□□ -0.18
PTPRN-202ENST00000409251 WDR91A4D1P6 747 aa13.95□□□□□ -0.18
PTPRN-202ENST00000409251 M0R2N6 131 aa13.95□□□□□ -0.18
PTPRN-202ENST00000409251 ALAS1P13196 640 aa13.95□□□□□ -0.18
PTPRN-202ENST00000409251 PMS2P54278 862 aa13.95□□□□□ -0.18
PTPRN-202ENST00000409251 DRP2Q13474 957 aa13.95□□□□□ -0.18
PTPRN-202ENST00000409251 NAB2Q15742 525 aa13.95□□□□□ -0.18
PTPRN-202ENST00000409251 GRIPAP1Q4V328 841 aa13.95□□□□□ -0.18
PTPRN-202ENST00000409251 NBPF12Q5TAG4 269 aaPredicted RBP13.95□□□□□ -0.18
PTPRN-202ENST00000409251 VPS36Q86VN1 386 aa13.95□□□□□ -0.18
PTPRN-202ENST00000409251 GLYCTKQ8IVS8 523 aa13.95□□□□□ -0.18
PTPRN-202ENST00000409251 PIDD1Q9HB75 910 aa13.95□□□□□ -0.18
PTPRN-202ENST00000409251 SH3GLB2Q9NR46 395 aa13.95□□□□□ -0.18
PTPRN-202ENST00000409251 RGL1Q9NZL6 768 aa13.95□□□□□ -0.18
PTPRN-202ENST00000409251 CTDP1Q9Y5B0 961 aaPredicted RBP13.95□□□□□ -0.18
PTPRN-202ENST00000409251 COL4A3BPQ9Y5P4 624 aa13.95□□□□□ -0.18
PTPRN-202ENST00000409251 MYH15Q9Y2K3 1946 aa13.95□□□□□ -0.18
PTPRN-202ENST00000409251 SMCHD1A6NHR9 2005 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms