RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 RTN2O75298 545 aa10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 PLA2G4BP0C869 781 aa10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 NQO1P15559 274 aaKnown RBP10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 IL6STP40189 918 aaPredicted RBP10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 CYP4A11Q02928 519 aa10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 KCNA1Q09470 495 aa10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 TRIP13Q15645 432 aaPredicted RBP10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 THEMIS2Q5TEJ8 643 aa10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 PARD3BQ8TEW8 1205 aa10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 MRRFQ96E11 262 aaKnown RBP10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 RAB17Q9H0T7 212 aa10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 DDX25Q9UHL0 483 aaKnown RBP10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 GOLGA6L10A0A0M3HER8 536 aa10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 ERVV-1B6SEH8 477 aa10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 RASGRF2O14827 1237 aa10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 PON1P27169 355 aa10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 CRKLP46109 303 aaKnown RBP10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 GNPTABQ3T906 1256 aa10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 SLC30A10Q6XR72 485 aa10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 ARMC2Q8NEN0 867 aa10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 ATP8B4Q8TF62 1192 aa10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 CEP95Q96GE4 821 aa10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 POP1Q99575 1024 aaKnown RBP10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 ERP44Q9BS26 406 aa10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 CTNNAL1Q9UBT7 734 aa10.67□□□□□ -0.7
PTCHD4-202ENST00000398738 IGSF9BQ9UPX0 1349 aa10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 STAU1O95793 577 aaKnown RBP10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 MARCKSL1P49006 195 aa10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 ADCY7P51828 1080 aa10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 SNX1Q13596 522 aa10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 UBE4AQ14139 1066 aa10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 PLS1Q14651 629 aa10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 GALNT17Q6IS24 598 aa10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 ZNF746Q6NUN9 644 aaPredicted RBP10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 TRMT1LQ7Z2T5 733 aaKnown RBP10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 JAMLQ86YT9 394 aa10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 CCDC105Q8IYK2 499 aa10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 C1orf131Q8NDD1 294 aaKnown RBP10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 ATXN2LQ8WWM7 1075 aaKnown RBP10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 CTNNBL1Q8WYA6 563 aaPredicted RBP10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 ARHGEF26Q96DR7 871 aa10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 HOOK2Q96ED9 719 aa10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 LRCH3Q96II8 777 aa10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 MTMR9Q96QG7 549 aa10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 ADAM7Q9H2U9 754 aa10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 PABPC3Q9H361 631 aaKnown RBP10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 TAS2R14Q9NYV8 317 aa10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 GH1P01241 217 aa10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 AFPP02771 609 aaKnown RBP10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 NCALDP61601 193 aa10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 TAF11Q15544 211 aa10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 ZCWPW2Q504Y3 356 aa10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 KIAA1755Q5JYT7 1200 aa10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 SYN2Q92777 582 aaPredicted RBP10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 TLCD1Q96CP7 247 aa10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 DDX23Q9BUQ8 820 aaKnown RBP10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 SLITRK6Q9H5Y7 841 aa10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 BTG4Q9NY30 223 aa10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 ADAMTS7Q9UKP4 1686 aa10.66□□□□□ -0.7
PTCHD4-202ENST00000398738 RSPH10B2B2RC85 870 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 AKAP3O75969 853 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 RSPH10BP0C881 870 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 GHRP10912 638 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 PSMC6P62333 389 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 DCAF12L1Q5VU92 463 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 DAGLBQ8NCG7 672 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 ALG3Q92685 438 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 SAAL1Q96ER3 474 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 NSRP1Q9H0G5 558 aaKnown RBP10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 USP17L15C9J2P7 530 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 USP17L13C9JLJ4 530 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 USP17L11C9JVI0 530 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 USP17L18D6R9N7 530 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 USP17L22D6RA61 530 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 USP17L17D6RBQ6 530 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 USP17L19D6RCP7 530 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 USP17L20D6RJB6 530 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 NTSR2O95665 410 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 LDHBP07195 334 aaKnown RBP10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 PAEPP09466 180 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 RARAP10276 462 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 RASA1P20936 1047 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 RPL21P46778 160 aaKnown RBP10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 EIF3BP55884 814 aaKnown RBP10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 SESN3P58005 492 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 USP17L24Q0WX57 530 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 SEMA3FQ13275 785 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 PICALMQ13492 652 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 NCOA4Q13772 614 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 MESDQ14696 234 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 USP17L6PQ6QN14 398 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 SFR1Q86XK3 245 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 PALB2Q86YC2 1186 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 C3orf20Q8ND61 904 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 KRT35Q92764 455 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 THAP2Q9H0W7 228 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 CTTNBP2NLQ9P2B4 639 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 ANKIB1Q9P2G1 1089 aa10.65□□□□□ -0.7
PTCHD4-202ENST00000398738 CAMTA1Q9Y6Y1 1673 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms