RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 UBN2Q6ZU65 1347 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 NLRP1Q9C000 1473 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 GTPBP10A4D1E9 387 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 ATP1A1P05023 1023 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 CYP2E1P05181 493 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 PMLP29590 882 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 GCLMP48507 274 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 VSNL1P62760 191 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 AP2B1P63010 937 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 EPHA10Q5JZY3 1008 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 SGMS1Q86VZ5 419 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 ZBTB18Q99592 522 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 EPC1Q9H2F5 836 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 DONSONQ9NYP3 566 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 HDAC4P56524 1084 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 ACTN3Q08043 901 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 TXNRD1Q16881 649 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 NAALADL2Q58DX5 795 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 TRAF7Q6Q0C0 670 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 PRPF38AQ8NAV1 312 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 PIGOQ8TEQ8 1089 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 SCG3Q8WXD2 468 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 CASP10Q92851 521 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 WDR24Q96S15 920 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 BATF3Q9NR55 127 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 FBXL5Q9UKA1 691 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 SPDYE2BA6NHP3 402 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 PPP1R37O75864 691 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 SPDYE6P0CI01 402 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 ZNF18P17022 549 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 EIF2AK2P19525 551 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 ELF1P32519 619 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 ATP6V1E1P36543 226 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 OSTNP61366 133 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 DAB2P98082 770 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 DRAP1Q14919 205 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 MFSD4BQ5TF39 518 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 PDXDC1Q6P996 788 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 ANO5Q75V66 913 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 DCPSQ96C86 337 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 ECT2Q9H8V3 914 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 TEKT2Q9UIF3 430 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 SESN1Q9Y6P5 492 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 ESRRBO95718 433 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 ZNF211Q13398 564 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 GRAPQ13588 217 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 GRM4Q14833 912 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 CDO1Q16878 200 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 DPP9Q86TI2 863 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 TRIM59Q8IWR1 403 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 ATP11CQ8NB49 1132 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 GRAPLQ8TC17 118 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 BTBD6Q96KE9 485 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 NUP85Q9BW27 656 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 TRIM8Q9BZR9 551 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 TBC1D23Q9NUY8 699 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 SENP1Q9P0U3 644 aa10.91□□□□□ -0.66
LIMCH1-203ENST00000396595 PPARGP37231 505 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 ATP2C1P98194 919 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 KIF19Q2TAC6 998 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 PPP6R3Q5H9R7 873 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 ABI1Q8IZP0 508 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 RNF139Q8WU17 664 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 SNF8Q96H20 258 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 RHBDL2Q9NX52 303 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 NDE1Q9NXR1 346 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 SNX12Q9UMY4 172 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 ADGRL3Q9HAR2 1447 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 F8W8V4 182 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 MYBL1P10243 752 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 CDC27P30260 824 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 PADI6Q6TGC4 694 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 RYBPQ8N488 228 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 C11orf70Q9BRQ4 267 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 COA1Q9GZY4 146 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 KLC4Q9NSK0 619 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 LIMA1Q9UHB6 759 aaKnown RBP10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 BCS1LQ9Y276 419 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 TBXAS1P24557 533 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 SOX5P35711 763 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 COPS2P61201 443 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 YWHAHQ04917 246 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 OLFML2BQ68BL8 750 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 TRIM72Q6ZMU5 477 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 SPATA17Q96L03 361 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 INTS2Q9H0H0 1204 aaKnown RBP10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 DBNDD1Q9H9R9 158 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 KLHL8Q9P2G9 620 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 WARS2Q9UGM6 360 aaKnown RBP10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 PRR36Q9H6K5 1346 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 MEFVO15553 781 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 DEAF1O75398 565 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 FTLP02792 175 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 SUSD4Q5VX71 490 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 CCDC137Q6PK04 289 aaKnown RBP10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 RHOT1Q8IXI2 618 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 STAG2Q8N3U4 1231 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 OMA1Q96E52 524 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 SMYD3Q9H7B4 428 aa10.9□□□□□ -0.66
LIMCH1-203ENST00000396595 UBN1Q9NPG3 1134 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms