RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 NFIBO00712 420 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 PHKA1P46020 1223 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 DMPKQ09013 629 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 PTGISQ16647 500 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 IMPG1Q17R60 797 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 FAM83BQ5T0W9 1011 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 AGBL2Q5U5Z8 902 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 ARL6IP4Q66PJ3 421 aaKnown RBP12.58□□□□□ -0.4
SYNPO-202ENST00000394243 SLFN13Q68D06 897 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 ZNF496Q96IT1 587 aaPredicted RBP12.58□□□□□ -0.4
SYNPO-202ENST00000394243 SPATA17Q96L03 361 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 NGRNQ9NPE2 291 aaKnown RBP12.58□□□□□ -0.4
SYNPO-202ENST00000394243 SNX2O60749 519 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 IGBP1P78318 339 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 CERKLQ49MI3 558 aaPredicted RBP12.58□□□□□ -0.4
SYNPO-202ENST00000394243 SZRD1Q7Z422 152 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 APLFQ8IW19 511 aaPredicted RBP12.58□□□□□ -0.4
SYNPO-202ENST00000394243 CPSF3Q9UKF6 684 aaKnown RBP12.58□□□□□ -0.4
SYNPO-202ENST00000394243 TMEM247A6NEH6 219 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 SFI1A8K8P3 1242 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 ACADSP16219 412 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 KPNB1Q14974 876 aaKnown RBP12.58□□□□□ -0.4
SYNPO-202ENST00000394243 MFSD14BQ5SR56 506 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 COA7Q96BR5 231 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 HEXIM2Q96MH2 286 aaKnown RBP12.58□□□□□ -0.4
SYNPO-202ENST00000394243 TEX12Q9BXU0 123 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 RSPH10B2B2RC85 870 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 KCNQ3O43525 872 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 RSPH10BP0C881 870 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 ZCCHC18P0CG32 403 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 KCNH2Q12809 1159 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 MAPRE2Q15555 327 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 ZNF710Q8N1W2 664 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 DPF2Q92785 391 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 PAPOLBQ9NRJ5 636 aaKnown RBP12.58□□□□□ -0.4
SYNPO-202ENST00000394243 CDV3Q9UKY7 258 aaKnown RBP12.58□□□□□ -0.4
SYNPO-202ENST00000394243 POTEB3A0JP26 581 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 LRRIQ3A6PVS8 624 aaPredicted RBP12.58□□□□□ -0.4
SYNPO-202ENST00000394243 PIK3R2O00459 728 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 DLGAP3O95886 979 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 TRAPPC3LQ5T215 181 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 POTEBQ6S5H4 581 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 UNC13DQ70J99 1090 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 TBC1D22AQ8WUA7 517 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 NRBP2Q9NSY0 501 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 KLHL8Q9P2G9 620 aaPredicted RBP12.58□□□□□ -0.4
SYNPO-202ENST00000394243 ZDHHC9Q9Y397 364 aa12.58□□□□□ -0.4
SYNPO-202ENST00000394243 A0A1B0GW55 424 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 B2RBV5 119 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 DUX4L2P0CJ85 424 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 DUX4L3P0CJ86 424 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 DUX4L4P0CJ87 422 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 DUX4L5P0CJ88 424 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 DUX4L6P0CJ89 424 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 DUX4L7P0CJ90 424 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 ATXN8OSP0DMR3 200 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 IFNA8P32881 189 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 TOB2Q14106 344 aaPredicted RBP12.57□□□□□ -0.4
SYNPO-202ENST00000394243 ANKMY2Q8IV38 441 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 CLEC4FQ8N1N0 589 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 KIF2CQ99661 725 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 DUX4Q9UBX2 424 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 GJA3Q9Y6H8 435 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 PLA2G4AP47712 749 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 TCIRG1Q13488 830 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 KCTD1Q719H9 257 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 SCG3Q8WXD2 468 aaKnown RBP12.57□□□□□ -0.4
SYNPO-202ENST00000394243 WNT8AQ9H1J5 351 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 RNPEPQ9H4A4 650 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 MARCOQ9UEW3 520 aaPredicted RBP12.57□□□□□ -0.4
SYNPO-202ENST00000394243 LIMA1Q9UHB6 759 aaKnown RBP12.57□□□□□ -0.4
SYNPO-202ENST00000394243 TBC1D4O60343 1298 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 B4GALNT2Q8NHY0 566 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 PIGSQ96S52 555 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 CHP1Q99653 195 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 RUBCNLQ9H714 662 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 SENP1Q9P0U3 644 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 DSG1Q02413 1049 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 ASPRV1Q53RT3 343 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 ZBTB33Q86T24 672 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 HEATR4Q86WZ0 1026 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 RNF135Q8IUD6 432 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 AMNQ9BXJ7 453 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 FTLP02792 175 aaPredicted RBP12.57□□□□□ -0.4
SYNPO-202ENST00000394243 GTF2IP78347 998 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 RCN1Q15293 331 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 ZNF579Q8NAF0 562 aaKnown RBP12.57□□□□□ -0.4
SYNPO-202ENST00000394243 CAAP1Q9H8G2 361 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 LRRC4Q9HBW1 653 aa12.57□□□□□ -0.4
SYNPO-202ENST00000394243 EDC4Q6P2E9 1401 aaKnown RBP12.57□□□□□ -0.4
SYNPO-202ENST00000394243 TYK2P29597 1187 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 DDIASQ8IXT1 998 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 TTC8Q8TAM2 541 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 CYP26B1Q9NR63 512 aa12.56□□□□□ -0.4
SYNPO-202ENST00000394243 SMG5Q9UPR3 1016 aaKnown RBP12.56□□□□□ -0.4
SYNPO-202ENST00000394243 CAB39Q9Y376 341 aaPredicted RBP12.56□□□□□ -0.4
SYNPO-202ENST00000394243 LZTS3O60299 673 aaPredicted RBP12.56□□□□□ -0.4
SYNPO-202ENST00000394243 CDC37Q16543 378 aaPredicted RBP12.56□□□□□ -0.4
SYNPO-202ENST00000394243 SPOUT1Q5T280 376 aaKnown RBP12.56□□□□□ -0.4
SYNPO-202ENST00000394243 SIRT2Q8IXJ6 389 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms