RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 GRAPLQ8TC17 118 aaPredicted RBP13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 DYNLL2Q96FJ2 89 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 CCDC90BQ9GZT6 254 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 CASS4Q9NQ75 786 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 GRID2IPA4D2P6 1211 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 PRKAB2O43741 272 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 MKRN3Q13064 507 aaKnown RBP13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 PASD1Q8IV76 773 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 NUP85Q9BW27 656 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 PIDD1Q9HB75 910 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 TMEM2Q9UHN6 1383 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 MYO3BQ8WXR4 1341 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 RNF103-CHMP3A0A140T963 221 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 SDC4P31431 198 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 VCPP55072 806 aaKnown RBP13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 TRIM60Q495X7 471 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 TMEM270Q6UE05 265 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 ANO5Q75V66 913 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 ZNF302Q9NR11 478 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 DIAPH2O60879 1101 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 NR3C1P04150 777 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 PMS2P54278 862 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 SEC31BQ9NQW1 1179 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 STOML1Q9UBI4 398 aa13.6□□□□□ -0.23
CCDC88C-204ENST00000389857 CCDC195A0A1B0GUA6 201 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 PRAMEP78395 509 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 ORC2Q13416 577 aaPredicted RBP13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 TRIM72Q6ZMU5 477 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 PUS7LQ9H0K6 701 aaKnown RBP13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 NDFIP2Q9NV92 336 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 PCDHGB4Q9UN71 923 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 M0QYV0 167 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 ZSCAN9O15535 394 aaPredicted RBP13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 GGPS1O95749 300 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 SFNP31947 248 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 RAD51Q06609 339 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 NBPF10Q6P3W6 841 aaKnown RBP13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 TEX2Q8IWB9 1127 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 HSPA1AP0DMV8 641 aaKnown RBP13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 HSPA1BP0DMV9 641 aaKnown RBP13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 CLCN6P51797 869 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 ACCSLQ4AC99 568 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 DYDC2Q96IM9 177 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 WNT8AQ9H1J5 351 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 BSDC1Q9NW68 430 aaPredicted RBP13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 ADAMTS1Q9UHI8 967 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 ASAP1Q9ULH1 1129 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 GDAQ9Y2T3 454 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 CHGBP05060 677 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 RAPGEF5Q92565 580 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 PCDHB8Q9UN66 801 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 ZBTB5O15062 677 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 RALAP11233 206 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 TTLL4Q14679 1199 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 CATSPER1Q8NEC5 780 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 PIGOQ8TEQ8 1089 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 MAP3K20Q9NYL2 800 aaKnown RBP13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 SYNDIG1LA6NDD5 238 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 RXRBP28702 533 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 BLVRAP53004 296 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 KRT76Q01546 638 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 PTPN21Q16825 1174 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 DCAF4L1Q3SXM0 396 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 BEND6Q5SZJ8 279 aaPredicted RBP13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 ZNF564Q8TBZ8 553 aaPredicted RBP13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 RAD54LQ92698 747 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 SNF8Q96H20 258 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 RMDN3Q96TC7 470 aa13.59□□□□□ -0.23
CCDC88C-204ENST00000389857 SFI1A8K8P3 1242 aa13.58□□□□□ -0.23
CCDC88C-204ENST00000389857 AP3B1O00203 1094 aa13.58□□□□□ -0.23
CCDC88C-204ENST00000389857 HAUS5O94927 633 aa13.58□□□□□ -0.23
CCDC88C-204ENST00000389857 GNA15P30679 374 aa13.58□□□□□ -0.23
CCDC88C-204ENST00000389857 NLRP10Q86W26 655 aa13.58□□□□□ -0.23
CCDC88C-204ENST00000389857 CCNYL1Q8N7R7 359 aa13.58□□□□□ -0.23
CCDC88C-204ENST00000389857 MRPL4Q9BYD3 311 aaKnown RBP13.58□□□□□ -0.23
CCDC88C-204ENST00000389857 ATP7BP35670 1465 aa13.58□□□□□ -0.23
CCDC88C-204ENST00000389857 SERPINB10P48595 397 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 SNAP25P60880 206 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 ZNF394Q53GI3 561 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 TAS2R42Q7RTR8 314 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 PODNQ7Z5L7 613 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 CNPY4Q8N129 248 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 ABCB11O95342 1321 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 KDM5CP41229 1560 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 ZNF197O14709 1029 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 HOXD10P28358 340 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 CDC25AP30304 524 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 CYP27A1Q02318 531 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 BRIP1Q9BX63 1249 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 CHUKO15111 745 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 IL10P22301 178 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 ENOSF1Q7L5Y1 443 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 ABHD10Q9NUJ1 306 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 PCYT1AP49585 367 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 DDIASQ8IXT1 998 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 OLFM3Q96PB7 478 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 ARHGAP10A1A4S6 786 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 ARIH2O95376 493 aa13.58□□□□□ -0.24
CCDC88C-204ENST00000389857 VAMP7P51809 220 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms