RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 POU5F1BQ06416 359 aa14.79□□□□□ -0.04
VPS28-202ENST00000377348 AMHR2Q16671 573 aa14.79□□□□□ -0.04
VPS28-202ENST00000377348 NAALADL2Q58DX5 795 aa14.79□□□□□ -0.04
VPS28-202ENST00000377348 ARSHQ5FYA8 562 aa14.79□□□□□ -0.04
VPS28-202ENST00000377348 AXDND1Q5T1B0 1012 aaPredicted RBP14.79□□□□□ -0.04
VPS28-202ENST00000377348 ATL3Q6DD88 541 aa14.79□□□□□ -0.04
VPS28-202ENST00000377348 SHC4Q6S5L8 630 aa14.79□□□□□ -0.04
VPS28-202ENST00000377348 GPBP1Q86WP2 473 aa14.79□□□□□ -0.04
VPS28-202ENST00000377348 IFNLR1Q8IU57 520 aaPredicted RBP14.79□□□□□ -0.04
VPS28-202ENST00000377348 ADGRA3Q8IWK6 1321 aa14.79□□□□□ -0.04
VPS28-202ENST00000377348 KCNG4Q8TDN1 519 aa14.79□□□□□ -0.04
VPS28-202ENST00000377348 LARP4BQ92615 738 aaKnown RBP14.79□□□□□ -0.04
VPS28-202ENST00000377348 CPB2Q96IY4 423 aa14.79□□□□□ -0.04
VPS28-202ENST00000377348 GUCD1Q96NT3 240 aa14.79□□□□□ -0.04
VPS28-202ENST00000377348 RC3H2Q9HBD1 1191 aaKnown RBP14.79□□□□□ -0.04
VPS28-202ENST00000377348 AGPAT5Q9NUQ2 364 aa14.79□□□□□ -0.04
VPS28-202ENST00000377348 MTMR10Q9NXD2 777 aa14.79□□□□□ -0.04
VPS28-202ENST00000377348 CCDC39Q9UFE4 941 aa14.79□□□□□ -0.04
VPS28-202ENST00000377348 CFAP45Q9UL16 551 aa14.79□□□□□ -0.04
VPS28-202ENST00000377348 LRFN2Q9ULH4 789 aa14.79□□□□□ -0.04
VPS28-202ENST00000377348 PCDHA7Q9UN72 937 aa14.79□□□□□ -0.04
VPS28-202ENST00000377348 PCDHB7Q9Y5E2 793 aa14.79□□□□□ -0.04
VPS28-202ENST00000377348 B4GALT5O43286 388 aa14.78□□□□□ -0.04
VPS28-202ENST00000377348 TSPAN1O60635 241 aa14.78□□□□□ -0.04
VPS28-202ENST00000377348 CUTAO60888 179 aa14.78□□□□□ -0.04
VPS28-202ENST00000377348 DGKIO75912 1065 aa14.78□□□□□ -0.04
VPS28-202ENST00000377348 ERLIN2O94905 339 aa14.78□□□□□ -0.04
VPS28-202ENST00000377348 STAG3L1P0CL83 205 aa14.78□□□□□ -0.04
VPS28-202ENST00000377348 LIG1P18858 919 aa14.78□□□□□ -0.04
VPS28-202ENST00000377348 GUCY2CP25092 1073 aa14.78□□□□□ -0.04
VPS28-202ENST00000377348 NAMPTP43490 491 aa14.78□□□□□ -0.04
VPS28-202ENST00000377348 PEX3P56589 373 aa14.78□□□□□ -0.04
VPS28-202ENST00000377348 RRAGBQ5VZM2 374 aa14.78□□□□□ -0.04
VPS28-202ENST00000377348 CDCA2Q69YH5 1023 aaPredicted RBP14.78□□□□□ -0.04
VPS28-202ENST00000377348 TWF2Q6IBS0 349 aaKnown RBP14.78□□□□□ -0.04
VPS28-202ENST00000377348 ECHDC2Q86YB7 292 aa14.78□□□□□ -0.04
VPS28-202ENST00000377348 PDILTQ8N807 584 aa14.78□□□□□ -0.04
VPS28-202ENST00000377348 RNF169Q8NCN4 708 aa14.78□□□□□ -0.04
VPS28-202ENST00000377348 DEPTORQ8TB45 409 aa14.78□□□□□ -0.04
VPS28-202ENST00000377348 SP7Q8TDD2 431 aaPredicted RBP14.78□□□□□ -0.04
VPS28-202ENST00000377348 LEO1Q8WVC0 666 aaPredicted RBP14.78□□□□□ -0.04
VPS28-202ENST00000377348 ZNF689Q96CS4 500 aaPredicted RBP14.78□□□□□ -0.04
VPS28-202ENST00000377348 IFT74Q96LB3 600 aa14.78□□□□□ -0.04
VPS28-202ENST00000377348 NFKBIZQ9BYH8 718 aa14.78□□□□□ -0.04
VPS28-202ENST00000377348 PRDM12Q9H4Q4 367 aa14.78□□□□□ -0.04
VPS28-202ENST00000377348 CHST12Q9NRB3 414 aa14.78□□□□□ -0.04
VPS28-202ENST00000377348 RCOR1Q9UKL0 485 aa14.78□□□□□ -0.04
VPS28-202ENST00000377348 MTUS1Q9ULD2 1270 aa14.78□□□□□ -0.04
VPS28-202ENST00000377348 USP20Q9Y2K6 914 aa14.78□□□□□ -0.04
VPS28-202ENST00000377348 COL4A6Q14031 1691 aa14.77□□□□□ -0.04
VPS28-202ENST00000377348 EPOPA6NHQ4 379 aa14.77□□□□□ -0.05
VPS28-202ENST00000377348 TTLL13PA6NNM8 815 aa14.77□□□□□ -0.05
VPS28-202ENST00000377348 RFXAPO00287 272 aa14.77□□□□□ -0.05
VPS28-202ENST00000377348 EDN1P05305 212 aa14.77□□□□□ -0.05
VPS28-202ENST00000377348 FGFR1P11362 822 aa14.77□□□□□ -0.05
VPS28-202ENST00000377348 NPTX2P47972 431 aa14.77□□□□□ -0.05
VPS28-202ENST00000377348 KRT85P78386 507 aa14.77□□□□□ -0.05
VPS28-202ENST00000377348 LONRF3Q496Y0 759 aa14.77□□□□□ -0.05
VPS28-202ENST00000377348 PAN2Q504Q3 1202 aaKnown RBP14.77□□□□□ -0.05
VPS28-202ENST00000377348 CDR2LQ86X02 465 aaPredicted RBP14.77□□□□□ -0.05
VPS28-202ENST00000377348 ZBTB8OSQ8IWT0 167 aa14.77□□□□□ -0.05
VPS28-202ENST00000377348 MYLIPQ8WY64 445 aa14.77□□□□□ -0.05
VPS28-202ENST00000377348 ARNTL2Q8WYA1 636 aa14.77□□□□□ -0.05
VPS28-202ENST00000377348 DRC1Q96MC2 740 aa14.77□□□□□ -0.05
VPS28-202ENST00000377348 REEP2Q9BRK0 252 aa14.77□□□□□ -0.05
VPS28-202ENST00000377348 C17orf80Q9BSJ5 609 aa14.77□□□□□ -0.05
VPS28-202ENST00000377348 TMEM161AQ9NX61 479 aa14.77□□□□□ -0.05
VPS28-202ENST00000377348 DACT1Q9NYF0 836 aa14.77□□□□□ -0.05
VPS28-202ENST00000377348 EYSQ5T1H1 3165 aa14.77□□□□□ -0.05
VPS28-202ENST00000377348 A0A0U1RQF3 1178 aa14.76□□□□□ -0.05
VPS28-202ENST00000377348 CCDC169A6NNP5 214 aa14.76□□□□□ -0.05
VPS28-202ENST00000377348 ATF7P17544 494 aaPredicted RBP14.76□□□□□ -0.05
VPS28-202ENST00000377348 ARF4P18085 180 aaPredicted RBP14.76□□□□□ -0.05
VPS28-202ENST00000377348 ANP32AP39687 249 aaKnown RBP14.76□□□□□ -0.05
VPS28-202ENST00000377348 STAT6P42226 847 aa14.76□□□□□ -0.05
VPS28-202ENST00000377348 NUCB2P80303 420 aa14.76□□□□□ -0.05
VPS28-202ENST00000377348 DMP1Q13316 513 aaPredicted RBP14.76□□□□□ -0.05
VPS28-202ENST00000377348 BTG3Q14201 252 aaPredicted RBP14.76□□□□□ -0.05
VPS28-202ENST00000377348 PPP2R5AQ15172 486 aa14.76□□□□□ -0.05
VPS28-202ENST00000377348 UBXN11Q5T124 520 aa14.76□□□□□ -0.05
VPS28-202ENST00000377348 FAM43BQ6ZT52 329 aaPredicted RBP14.76□□□□□ -0.05
VPS28-202ENST00000377348 LPPQ93052 612 aa14.76□□□□□ -0.05
VPS28-202ENST00000377348 SPATA32Q96LK8 384 aa14.76□□□□□ -0.05
VPS28-202ENST00000377348 CDX2Q99626 313 aaPredicted RBP14.76□□□□□ -0.05
VPS28-202ENST00000377348 TIPINQ9BVW5 301 aa14.76□□□□□ -0.05
VPS28-202ENST00000377348 CCDC113Q9H0I3 377 aa14.76□□□□□ -0.05
VPS28-202ENST00000377348 C2orf40Q9H1Z8 148 aa14.76□□□□□ -0.05
VPS28-202ENST00000377348 FZD8Q9H461 694 aa14.76□□□□□ -0.05
VPS28-202ENST00000377348 ELAC1Q9H777 363 aaKnown RBP14.76□□□□□ -0.05
VPS28-202ENST00000377348 FAM105AQ9NUU6 356 aa14.76□□□□□ -0.05
VPS28-202ENST00000377348 RNF19AQ9NV58 838 aa14.76□□□□□ -0.05
VPS28-202ENST00000377348 KCND2Q9NZV8 630 aa14.76□□□□□ -0.05
VPS28-202ENST00000377348 STK17AQ9UEE5 414 aa14.76□□□□□ -0.05
VPS28-202ENST00000377348 TRANK1O15050 2925 aa14.75□□□□□ -0.05
VPS28-202ENST00000377348 TBKBP1A7MCY6 615 aa14.75□□□□□ -0.05
VPS28-202ENST00000377348 MEIS3P2A8K0S8 358 aa14.75□□□□□ -0.05
VPS28-202ENST00000377348 SLC16A4O15374 487 aa14.75□□□□□ -0.05
VPS28-202ENST00000377348 PRKCBP05771 671 aa14.75□□□□□ -0.05
VPS28-202ENST00000377348 KRT18P05783 430 aaKnown RBP14.75□□□□□ -0.05
VPS28-202ENST00000377348 PLS3P13797 630 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms