RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 PMS2P1A4D2B8 440 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 VSIG10L2P0DP72 767 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 SESN2P58004 480 aaPredicted RBP3.24□□□□□ -1.89
VPS13A-206ENST00000376646 CD69Q07108 199 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 FKBP15Q5T1M5 1219 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 C1QL3Q5VWW1 255 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 TIGD7Q6NT04 549 aaPredicted RBP3.24□□□□□ -1.89
VPS13A-206ENST00000376646 C16orf86Q6ZW13 317 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 NME9Q86XW9 330 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 TMPRSS6Q8IU80 811 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 THEMISQ8N1K5 641 aaPredicted RBP3.24□□□□□ -1.89
VPS13A-206ENST00000376646 SMC1BQ8NDV3 1235 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 LARP4BQ92615 738 aaKnown RBP3.24□□□□□ -1.89
VPS13A-206ENST00000376646 APPBP2Q92624 585 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 NINJ1Q92982 152 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 LPPQ93052 612 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 CLIP3Q96DZ5 547 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 FDXACB1Q9BRP7 624 aaPredicted RBP3.24□□□□□ -1.89
VPS13A-206ENST00000376646 IKZF4Q9H2S9 585 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 PRDM12Q9H4Q4 367 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 INTS7Q9NVH2 962 aaKnown RBP3.24□□□□□ -1.89
VPS13A-206ENST00000376646 CLEC2LP0C7M8 214 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 GAAP10253 952 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 HK1P19367 917 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 KIR2DL3P43628 341 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 RABGGTBP53611 331 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 DALRD3Q5D0E6 543 aaKnown RBP3.24□□□□□ -1.89
VPS13A-206ENST00000376646 EFHBQ8N7U6 833 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 ATXN2LQ8WWM7 1075 aaKnown RBP3.24□□□□□ -1.89
VPS13A-206ENST00000376646 MIEF2Q96C03 454 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 ZNF512Q96ME7 567 aaPredicted RBP3.24□□□□□ -1.89
VPS13A-206ENST00000376646 MPHOSPH9Q99550 1183 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 GPR87Q9BY21 358 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 USP35Q9P2H5 1018 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 MYPNQ86TC9 1320 aa3.24□□□□□ -1.89
VPS13A-206ENST00000376646 DAPK3O43293 454 aa3.23□□□□□ -1.89
VPS13A-206ENST00000376646 CDC45O75419 566 aa3.23□□□□□ -1.89
VPS13A-206ENST00000376646 CASRP41180 1078 aa3.23□□□□□ -1.89
VPS13A-206ENST00000376646 ADCYAP1R1P41586 468 aa3.23□□□□□ -1.89
VPS13A-206ENST00000376646 KPNA1P52294 538 aaPredicted RBP3.23□□□□□ -1.89
VPS13A-206ENST00000376646 ADCY1Q08828 1119 aa3.23□□□□□ -1.89
VPS13A-206ENST00000376646 CNGB1Q14028 1251 aaPredicted RBP3.23□□□□□ -1.89
VPS13A-206ENST00000376646 GSPT2Q8IYD1 628 aaKnown RBP3.23□□□□□ -1.89
VPS13A-206ENST00000376646 MSL3Q8N5Y2 521 aaKnown RBP3.23□□□□□ -1.89
VPS13A-206ENST00000376646 CHFRQ96EP1 664 aa3.23□□□□□ -1.89
VPS13A-206ENST00000376646 UIMC1Q96RL1 719 aa3.23□□□□□ -1.89
VPS13A-206ENST00000376646 ORAI3Q9BRQ5 295 aa3.23□□□□□ -1.89
VPS13A-206ENST00000376646 ANO3Q9BYT9 981 aa3.23□□□□□ -1.89
VPS13A-206ENST00000376646 MSL2Q9HCI7 577 aa3.23□□□□□ -1.89
VPS13A-206ENST00000376646 EDARQ9UNE0 448 aa3.23□□□□□ -1.89
VPS13A-206ENST00000376646 PRSS38A1L453 326 aa3.23□□□□□ -1.89
VPS13A-206ENST00000376646 KLRG2A4D1S0 409 aaPredicted RBP3.23□□□□□ -1.89
VPS13A-206ENST00000376646 JUNP05412 331 aaKnown RBP3.23□□□□□ -1.89
VPS13A-206ENST00000376646 POU3F2P20265 443 aaPredicted RBP3.23□□□□□ -1.89
VPS13A-206ENST00000376646 CD40P25942 277 aa3.23□□□□□ -1.89
VPS13A-206ENST00000376646 MCM7P33993 719 aa3.23□□□□□ -1.89
VPS13A-206ENST00000376646 MAN2A2P49641 1150 aa3.23□□□□□ -1.89
VPS13A-206ENST00000376646 IL2P60568 153 aa3.23□□□□□ -1.89
VPS13A-206ENST00000376646 TOB2Q14106 344 aaPredicted RBP3.23□□□□□ -1.89
VPS13A-206ENST00000376646 GAGE13Q4V321 117 aa3.23□□□□□ -1.89
VPS13A-206ENST00000376646 CMTM4Q8IZR5 234 aa3.23□□□□□ -1.89
VPS13A-206ENST00000376646 ANKRD35Q8N283 1001 aa3.23□□□□□ -1.89
VPS13A-206ENST00000376646 ZNF483Q8TF39 744 aaPredicted RBP3.23□□□□□ -1.89
VPS13A-206ENST00000376646 FERMT2Q96AC1 680 aa3.23□□□□□ -1.89
VPS13A-206ENST00000376646 ARL8AQ96BM9 186 aa3.23□□□□□ -1.89
VPS13A-206ENST00000376646 ZNF703Q9H7S9 590 aaPredicted RBP3.23□□□□□ -1.89
VPS13A-206ENST00000376646 C14orf93Q9H972 538 aaKnown RBP3.23□□□□□ -1.89
VPS13A-206ENST00000376646 XPO5Q9HAV4 1204 aaKnown RBP eCLIP3.23□□□□□ -1.89
VPS13A-206ENST00000376646 GPRC5BQ9NZH0 403 aa3.23□□□□□ -1.89
VPS13A-206ENST00000376646 PCDHB6Q9Y5E3 794 aa3.23□□□□□ -1.89
VPS13A-206ENST00000376646 PPP2R3BQ9Y5P8 575 aa3.23□□□□□ -1.89
VPS13A-206ENST00000376646 XDHP47989 1333 aa3.22□□□□□ -1.89
VPS13A-206ENST00000376646 CYP27B1O15528 508 aa3.22□□□□□ -1.89
VPS13A-206ENST00000376646 ALDH1A2O94788 518 aa3.22□□□□□ -1.89
VPS13A-206ENST00000376646 LY86O95711 162 aa3.22□□□□□ -1.89
VPS13A-206ENST00000376646 PFKMP08237 780 aa3.22□□□□□ -1.89
VPS13A-206ENST00000376646 NPEPPSP55786 919 aa3.22□□□□□ -1.89
VPS13A-206ENST00000376646 LEO1Q8WVC0 666 aaPredicted RBP3.22□□□□□ -1.89
VPS13A-206ENST00000376646 HIST1H2AHQ96KK5 128 aa3.22□□□□□ -1.89
VPS13A-206ENST00000376646 MNTQ99583 582 aa3.22□□□□□ -1.89
VPS13A-206ENST00000376646 HIST1H2AJQ99878 128 aa3.22□□□□□ -1.89
VPS13A-206ENST00000376646 SLITRK6Q9H5Y7 841 aa3.22□□□□□ -1.89
VPS13A-206ENST00000376646 PARPBPQ9NWS1 579 aa3.22□□□□□ -1.89
VPS13A-206ENST00000376646 SYNPO2Q9UMS6 1093 aa3.22□□□□□ -1.89
VPS13A-206ENST00000376646 KRT4P19013 534 aa3.22□□□□□ -1.89
VPS13A-206ENST00000376646 ID4P47928 161 aa3.22□□□□□ -1.89
VPS13A-206ENST00000376646 TGFB2P61812 414 aa3.22□□□□□ -1.89
VPS13A-206ENST00000376646 SPIDRQ14159 915 aa3.22□□□□□ -1.89
VPS13A-206ENST00000376646 TRIM25Q14258 630 aaKnown RBP3.22□□□□□ -1.89
VPS13A-206ENST00000376646 LRRC32Q14392 662 aa3.22□□□□□ -1.89
VPS13A-206ENST00000376646 Q6ZPA2 131 aa3.22□□□□□ -1.89
VPS13A-206ENST00000376646 ESPNLQ6ZVH7 1005 aa3.22□□□□□ -1.89
VPS13A-206ENST00000376646 XYLT1Q86Y38 959 aa3.22□□□□□ -1.89
VPS13A-206ENST00000376646 LYSMD2Q8IV50 215 aa3.22□□□□□ -1.89
VPS13A-206ENST00000376646 ZZZ3Q8IYH5 903 aa3.22□□□□□ -1.89
VPS13A-206ENST00000376646 SYNPOQ8N3V7 929 aa3.22□□□□□ -1.89
VPS13A-206ENST00000376646 GAB3Q8WWW8 586 aa3.22□□□□□ -1.89
VPS13A-206ENST00000376646 CPEB1Q9BZB8 566 aaKnown RBP3.22□□□□□ -1.89
VPS13A-206ENST00000376646 ST20-MTHFSA0A0A6YYL1 179 aa3.21□□□□□ -1.9
VPS13A-206ENST00000376646 FKBP9O95302 570 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms