RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 CLTAP09496 248 aa22.82■■□□□ 1.24
UPF3A-202ENST00000375299 QRICH1Q2TAL8 776 aa22.82■■□□□ 1.24
UPF3A-202ENST00000375299 CRY2Q49AN0 593 aa22.82■■□□□ 1.24
UPF3A-202ENST00000375299 AADACL2Q6P093 401 aa22.82■■□□□ 1.24
UPF3A-202ENST00000375299 FMNL3Q8IVF7 1028 aa22.82■■□□□ 1.24
UPF3A-202ENST00000375299 EBF2Q9HAK2 575 aa22.82■■□□□ 1.24
UPF3A-202ENST00000375299 PCYOX1Q9UHG3 505 aa22.82■■□□□ 1.24
UPF3A-202ENST00000375299 ARHGAP4P98171 946 aa22.82■■□□□ 1.24
UPF3A-202ENST00000375299 AP3B2Q13367 1082 aa22.82■■□□□ 1.24
UPF3A-202ENST00000375299 ACCSLQ4AC99 568 aa22.82■■□□□ 1.24
UPF3A-202ENST00000375299 PRELID2Q8N945 189 aa22.82■■□□□ 1.24
UPF3A-202ENST00000375299 CERKQ8TCT0 537 aa22.82■■□□□ 1.24
UPF3A-202ENST00000375299 CCHCR1Q8TD31 782 aa22.82■■□□□ 1.24
UPF3A-202ENST00000375299 HOOK2Q96ED9 719 aa22.82■■□□□ 1.24
UPF3A-202ENST00000375299 BHMT2Q9H2M3 363 aa22.82■■□□□ 1.24
UPF3A-202ENST00000375299 OLFML3Q9NRN5 406 aa22.82■■□□□ 1.24
UPF3A-202ENST00000375299 ABCF3Q9NUQ8 709 aa22.82■■□□□ 1.24
UPF3A-202ENST00000375299 SEPT11Q9NVA2 429 aaKnown RBP22.82■■□□□ 1.24
UPF3A-202ENST00000375299 ALG6Q9Y672 507 aa22.82■■□□□ 1.24
UPF3A-202ENST00000375299 STK24Q9Y6E0 443 aa22.82■■□□□ 1.24
UPF3A-202ENST00000375299 RIPK2O43353 540 aa22.81■■□□□ 1.24
UPF3A-202ENST00000375299 FGFR4P22455 802 aa22.81■■□□□ 1.24
UPF3A-202ENST00000375299 IFNAR2P48551 515 aa22.81■■□□□ 1.24
UPF3A-202ENST00000375299 HADHBP55084 474 aaKnown RBP22.81■■□□□ 1.24
UPF3A-202ENST00000375299 CNGA2Q16280 664 aa22.81■■□□□ 1.24
UPF3A-202ENST00000375299 NFIL3Q16649 462 aa22.81■■□□□ 1.24
UPF3A-202ENST00000375299 PNMA8AQ86V59 439 aaPredicted RBP22.81■■□□□ 1.24
UPF3A-202ENST00000375299 RHOT2Q8IXI1 618 aa22.81■■□□□ 1.24
UPF3A-202ENST00000375299 UHMK1Q8TAS1 419 aaKnown RBP22.81■■□□□ 1.24
UPF3A-202ENST00000375299 CRYGNQ8WXF5 182 aa22.81■■□□□ 1.24
UPF3A-202ENST00000375299 DAGLAQ9Y4D2 1042 aa22.81■■□□□ 1.24
UPF3A-202ENST00000375299 PCDHA1Q9Y5I3 950 aa22.81■■□□□ 1.24
UPF3A-202ENST00000375299 MIF4GDA9UHW6 222 aaKnown RBP22.81■■□□□ 1.24
UPF3A-202ENST00000375299 RPSAP08865 295 aaKnown RBP22.81■■□□□ 1.24
UPF3A-202ENST00000375299 CTNNA2P26232 953 aa22.81■■□□□ 1.24
UPF3A-202ENST00000375299 Q4G0T1 1027 aa22.81■■□□□ 1.24
UPF3A-202ENST00000375299 TAOK1Q7L7X3 1001 aa22.81■■□□□ 1.24
UPF3A-202ENST00000375299 PALB2Q86YC2 1186 aa22.81■■□□□ 1.24
UPF3A-202ENST00000375299 STAMBPL1Q96FJ0 436 aa22.81■■□□□ 1.24
UPF3A-202ENST00000375299 RSRC1Q96IZ7 334 aaKnown RBP22.81■■□□□ 1.24
UPF3A-202ENST00000375299 AGAP1Q9UPQ3 857 aa22.81■■□□□ 1.24
UPF3A-202ENST00000375299 GREB1LQ9C091 1923 aaPredicted RBP22.8■■□□□ 1.24
UPF3A-202ENST00000375299 FAM170AA1A519 330 aa22.8■■□□□ 1.24
UPF3A-202ENST00000375299 RASGRF2O14827 1237 aa22.8■■□□□ 1.24
UPF3A-202ENST00000375299 EIF3DO15371 548 aaKnown RBP eCLIP22.8■■□□□ 1.24
UPF3A-202ENST00000375299 SNX3O60493 162 aa22.8■■□□□ 1.24
UPF3A-202ENST00000375299 GAP43P17677 238 aa22.8■■□□□ 1.24
UPF3A-202ENST00000375299 SLCO1A2P46721 670 aa22.8■■□□□ 1.24
UPF3A-202ENST00000375299 AUHQ13825 339 aaKnown RBP22.8■■□□□ 1.24
UPF3A-202ENST00000375299 SLMAPQ14BN4 828 aa22.8■■□□□ 1.24
UPF3A-202ENST00000375299 C11orf63Q6NUN7 778 aa22.8■■□□□ 1.24
UPF3A-202ENST00000375299 TTC27Q6P3X3 843 aa22.8■■□□□ 1.24
UPF3A-202ENST00000375299 UBL4BQ8N7F7 174 aa22.8■■□□□ 1.24
UPF3A-202ENST00000375299 MKNK1Q9BUB5 465 aa22.8■■□□□ 1.24
UPF3A-202ENST00000375299 INTS2Q9H0H0 1204 aaKnown RBP22.8■■□□□ 1.24
UPF3A-202ENST00000375299 PCDHA3Q9Y5H8 950 aa22.8■■□□□ 1.24
UPF3A-202ENST00000375299 OAS1P00973 400 aaKnown RBP22.79■■□□□ 1.24
UPF3A-202ENST00000375299 ALAS1P13196 640 aa22.79■■□□□ 1.24
UPF3A-202ENST00000375299 PDE6CP51160 858 aa22.79■■□□□ 1.24
UPF3A-202ENST00000375299 CYP4A11Q02928 519 aa22.79■■□□□ 1.24
UPF3A-202ENST00000375299 ZNF268Q14587 947 aaPredicted RBP22.79■■□□□ 1.24
UPF3A-202ENST00000375299 LENG9Q96B70 501 aa22.79■■□□□ 1.24
UPF3A-202ENST00000375299 CCDC113Q9H0I3 377 aa22.79■■□□□ 1.24
UPF3A-202ENST00000375299 IKZF4Q9H2S9 585 aa22.79■■□□□ 1.24
UPF3A-202ENST00000375299 APEX2Q9UBZ4 518 aa22.79■■□□□ 1.24
UPF3A-202ENST00000375299 MEIS2O14770 477 aa22.79■■□□□ 1.24
UPF3A-202ENST00000375299 EYA4O95677 639 aa22.79■■□□□ 1.24
UPF3A-202ENST00000375299 RARGP13631 454 aa22.79■■□□□ 1.24
UPF3A-202ENST00000375299 CBWD6Q4V339 395 aa22.79■■□□□ 1.24
UPF3A-202ENST00000375299 CBWD3Q5JTY5 395 aa22.79■■□□□ 1.24
UPF3A-202ENST00000375299 CBWD5Q5RIA9 395 aa22.79■■□□□ 1.24
UPF3A-202ENST00000375299 KRT35Q92764 455 aa22.79■■□□□ 1.24
UPF3A-202ENST00000375299 SERPINB13Q9UIV8 391 aa22.79■■□□□ 1.24
UPF3A-202ENST00000375299 RABGAP1Q9Y3P9 1069 aa22.79■■□□□ 1.24
UPF3A-202ENST00000375299 UBOX5O94941 541 aa22.78■■□□□ 1.24
UPF3A-202ENST00000375299 GGPS1O95749 300 aa22.78■■□□□ 1.24
UPF3A-202ENST00000375299 NQO1P15559 274 aaKnown RBP22.78■■□□□ 1.24
UPF3A-202ENST00000375299 NCALDP61601 193 aa22.78■■□□□ 1.24
UPF3A-202ENST00000375299 KIF22Q14807 665 aa22.78■■□□□ 1.24
UPF3A-202ENST00000375299 MFSD5Q6N075 450 aa22.78■■□□□ 1.24
UPF3A-202ENST00000375299 CCDC137Q6PK04 289 aaKnown RBP22.78■■□□□ 1.24
UPF3A-202ENST00000375299 TBC1D22AQ8WUA7 517 aa22.78■■□□□ 1.24
UPF3A-202ENST00000375299 P2RX7Q99572 595 aaKnown RBP22.78■■□□□ 1.24
UPF3A-202ENST00000375299 ZSWIM1Q9BR11 485 aa22.78■■□□□ 1.24
UPF3A-202ENST00000375299 POLLQ9UGP5 575 aa22.78■■□□□ 1.24
UPF3A-202ENST00000375299 RARAP10276 462 aa22.78■■□□□ 1.24
UPF3A-202ENST00000375299 SHMT1P34896 483 aa22.78■■□□□ 1.24
UPF3A-202ENST00000375299 SLC8A3P57103 927 aa22.78■■□□□ 1.24
UPF3A-202ENST00000375299 ZDHHC14Q8IZN3 488 aa22.78■■□□□ 1.24
UPF3A-202ENST00000375299 BANK1Q8NDB2 785 aa22.78■■□□□ 1.24
UPF3A-202ENST00000375299 CD2APQ9Y5K6 639 aa22.78■■□□□ 1.24
UPF3A-202ENST00000375299 THSD7AQ9UPZ6 1657 aa22.78■■□□□ 1.24
UPF3A-202ENST00000375299 SFI1A8K8P3 1242 aa22.77■■□□□ 1.24
UPF3A-202ENST00000375299 ALADP13716 330 aa22.77■■□□□ 1.24
UPF3A-202ENST00000375299 NMT1P30419 496 aaKnown RBP22.77■■□□□ 1.24
UPF3A-202ENST00000375299 MARCKSL1P49006 195 aa22.77■■□□□ 1.24
UPF3A-202ENST00000375299 MYO1EQ12965 1108 aa22.77■■□□□ 1.24
UPF3A-202ENST00000375299 CTTNQ14247 550 aaKnown RBP22.77■■□□□ 1.24
UPF3A-202ENST00000375299 ARHGAP44Q17R89 818 aa22.77■■□□□ 1.24
UPF3A-202ENST00000375299 SEL1L2Q5TEA6 688 aa22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms