RNA–Protein interactions for RNA: ENST00000374747.9

NPLOC4-202, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 2 BASIC

Gene NPLOC4, Length 5,538 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-202ENST00000374747 USP17L11C9JVI0 530 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 USP17L18D6R9N7 530 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 USP17L22D6RA61 530 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 USP17L17D6RBQ6 530 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 USP17L19D6RCP7 530 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 USP17L20D6RJB6 530 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 USP17L24Q0WX57 530 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 NR1H3Q13133 447 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 SLC12A1Q13621 1099 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 USP17L6PQ6QN14 398 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 LRP10Q7Z4F1 713 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 PPARGC1AQ9UBK2 798 aaKnown RBP13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 SYNGAP1Q96PV0 1343 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 JAK3P52333 1124 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 CEP19Q96LK0 163 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 GMNCA6NCL1 334 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 MIF4GDA9UHW6 222 aaKnown RBP13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 PALMO75781 387 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 PYGBP11216 843 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 SPP2Q13103 211 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 FAM47CQ5HY64 1035 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 BEND6Q5SZJ8 279 aaPredicted RBP13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 FMR1NBQ8N0W7 255 aaPredicted RBP13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 STAG2Q8N3U4 1231 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 PSPC1Q8WXF1 523 aaKnown RBP13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 NYAP2Q9P242 653 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 ANTXR2P58335 489 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 TMPRSS15P98073 1019 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 LCA5Q86VQ0 697 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 COL23A1Q86Y22 540 aaPredicted RBP13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 FBXL13Q8NEE6 735 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 BPIFA3Q9BQP9 254 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 YIPF3Q9GZM5 350 aa13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 DNAJC17Q9NVM6 304 aaKnown RBP13.12□□□□□ -0.31
NPLOC4-202ENST00000374747 PRPSAP2O60256 369 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 DYNC1I2Q13409 638 aaKnown RBP13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 RMDN3Q96TC7 470 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 GIPC2Q8TF65 315 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 FAM96AQ9H5X1 160 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 ZFP69BQ9UJL9 534 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 SNX24Q9Y343 169 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 RASA4BC9J798 803 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 COPEO14579 308 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 RASA4O43374 803 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 HSPA4LO95757 839 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 ZBED1O96006 694 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 MRPS25P82663 173 aaKnown RBP13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 CDR2Q01850 454 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 ARHGEF6Q15052 776 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 GRAMD4Q6IC98 578 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 UNC13DQ70J99 1090 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 HIPK4Q8NE63 616 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 TTC17Q96AE7 1141 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 MAP3K14Q99558 947 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 KIFC3Q9BVG8 833 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 RAVER2Q9HCJ3 691 aaKnown RBP13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 SAYSD1Q9NPB0 183 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 TBC1D22BQ9NU19 505 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 KIF13AQ9H1H9 1805 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 SRGAP2O75044 1071 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 USP11P51784 963 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 PPP2R2AP63151 447 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 OCRLQ01968 901 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 ZNF543Q08ER8 600 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 TSTA3Q13630 321 aaPredicted RBP13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 EZH2Q15910 746 aaKnown RBP13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 CHMP6Q96FZ7 201 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 DYDC2Q96IM9 177 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 POLR3CQ9BUI4 534 aaPredicted RBP13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 AP5M1Q9H0R1 490 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 LGALS16A8MUM7 142 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 MAGOHP61326 146 aaKnown RBP13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 IGBP1P78318 339 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 OCA2Q04671 838 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 FAM47EQ6ZV65 393 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 ZC3H15Q8WU90 426 aaKnown RBP13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 FAM151AQ8WW52 585 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 BHMT2Q9H2M3 363 aa13.11□□□□□ -0.31
NPLOC4-202ENST00000374747 NFAT5O94916 1531 aa13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 RASA1P20936 1047 aa13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 SPOUT1Q5T280 376 aaKnown RBP13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 TRIM67Q6ZTA4 783 aa13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 SCHIP1Q9P0W5 487 aaPredicted RBP13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 CEP72Q9P209 647 aa13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 MORC2Q9Y6X9 1032 aaPredicted RBP13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 CHEK2O96017 543 aa13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 MCF2P10911 925 aa13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 R3HDM1Q15032 1099 aaKnown RBP13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 CCDC144BQ3MJ40 725 aa13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 FSCBQ5H9T9 825 aa13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 SNRNP48Q6IEG0 339 aaKnown RBP13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 MICALL2Q8IY33 904 aa13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 C2orf69Q8N8R5 385 aa13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 NSUN6Q8TEA1 469 aaKnown RBP13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 THOC1Q96FV9 657 aaKnown RBP13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 ZNF70Q9UC06 446 aaPredicted RBP13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 APOBEC2Q9Y235 224 aaKnown RBP13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 KIF28PB7ZC32 967 aa13.1□□□□□ -0.31
NPLOC4-202ENST00000374747 PRELPP51888 382 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms