RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 NFICP08651 508 aa8.01□□□□□ -1.13
VPS13A-201ENST00000355766 GJA9P57773 515 aa8.01□□□□□ -1.13
VPS13A-201ENST00000355766 FGD1P98174 961 aa8.01□□□□□ -1.13
VPS13A-201ENST00000355766 GABPAQ06546 454 aa8.01□□□□□ -1.13
VPS13A-201ENST00000355766 PPARAQ07869 468 aa8.01□□□□□ -1.13
VPS13A-201ENST00000355766 ORC1Q13415 861 aa8.01□□□□□ -1.13
VPS13A-201ENST00000355766 CCDC178Q5BJE1 867 aa8.01□□□□□ -1.13
VPS13A-201ENST00000355766 KRT40Q6A162 431 aa8.01□□□□□ -1.13
VPS13A-201ENST00000355766 MFSD6Q6ZSS7 791 aa8.01□□□□□ -1.13
VPS13A-201ENST00000355766 ABI1Q8IZP0 508 aa8.01□□□□□ -1.13
VPS13A-201ENST00000355766 MIGA1Q8NAN2 632 aa8.01□□□□□ -1.13
VPS13A-201ENST00000355766 SLC43A3Q8NBI5 491 aa8.01□□□□□ -1.13
VPS13A-201ENST00000355766 ESR2Q92731 530 aa8.01□□□□□ -1.13
VPS13A-201ENST00000355766 GATA6Q92908 595 aa8.01□□□□□ -1.13
VPS13A-201ENST00000355766 YIPF2Q9BWQ6 316 aa8.01□□□□□ -1.13
VPS13A-201ENST00000355766 WNT8AQ9H1J5 351 aa8.01□□□□□ -1.13
VPS13A-201ENST00000355766 KCNH6Q9H252 994 aa8.01□□□□□ -1.13
VPS13A-201ENST00000355766 ARMT1Q9H993 441 aa8.01□□□□□ -1.13
VPS13A-201ENST00000355766 SPC25Q9HBM1 224 aa8.01□□□□□ -1.13
VPS13A-201ENST00000355766 ZNF214Q9UL59 606 aaPredicted RBP8.01□□□□□ -1.13
VPS13A-201ENST00000355766 TPCN1Q9ULQ1 816 aa8.01□□□□□ -1.13
VPS13A-201ENST00000355766 SMC3Q9UQE7 1217 aa8.01□□□□□ -1.13
VPS13A-201ENST00000355766 COL4A4P53420 1690 aaPredicted RBP8.01□□□□□ -1.13
VPS13A-201ENST00000355766 FAM170BA6NMN3 283 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 MPHOSPH10O00566 681 aaKnown RBP8□□□□□ -1.13
VPS13A-201ENST00000355766 PRC1O43663 620 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 CDKL5O76039 1030 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 PRNPP04156 253 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 PFKMP08237 780 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 RAB6AP20340 208 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 PLCD1P51178 756 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 CCL23P55773 120 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 NKX3-2P78367 333 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 ICA1Q05084 483 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 ME3Q16798 604 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 TMEM67Q5HYA8 995 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 MAMDC4Q6UXC1 1216 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 Q6ZUG5 572 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 TMEM179Q6ZVK1 233 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 DYMQ7RTS9 669 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 TBC1D10CQ8IV04 446 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 SPICE1Q8N0Z3 855 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 VWCEQ96DN2 955 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 FBXL18Q96ME1 805 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 NOC4LQ9BVI4 516 aaKnown RBP8□□□□□ -1.13
VPS13A-201ENST00000355766 SH2D4AQ9H788 454 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 VCPKMTQ9H867 229 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 CERS4Q9HA82 394 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 DCP1AQ9NPI6 582 aaPredicted RBP8□□□□□ -1.13
VPS13A-201ENST00000355766 CCDC39Q9UFE4 941 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 ADAMTS5Q9UNA0 930 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 TMX2Q9Y320 296 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 TAF6LQ9Y6J9 622 aa8□□□□□ -1.13
VPS13A-201ENST00000355766 DNAJC25-GNG10A0A024R161 153 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 CCDC196A0A1B0GTZ2 297 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 VWA5AO00534 786 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 SH2B2O14492 632 aaPredicted RBP7.99□□□□□ -1.13
VPS13A-201ENST00000355766 CTAGE5O15320 804 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 CYP26A1O43174 497 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 ITPKAP23677 461 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 MCM4P33991 863 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 STAT3P40763 770 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 PDE4BQ07343 736 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 GRB10Q13322 594 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 ACVR2BQ13705 512 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 SKOR2Q2VWA4 1001 aaPredicted RBP7.99□□□□□ -1.13
VPS13A-201ENST00000355766 CPLX2Q6PUV4 134 aaKnown RBP7.99□□□□□ -1.13
VPS13A-201ENST00000355766 NFXL1Q6ZNB6 911 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 RPUSD2Q8IZ73 545 aaKnown RBP7.99□□□□□ -1.13
VPS13A-201ENST00000355766 FAM177A1Q8N128 213 aaPredicted RBP7.99□□□□□ -1.13
VPS13A-201ENST00000355766 NAV1Q8NEY1 1877 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 REPS2Q8NFH8 660 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 SMARCC2Q8TAQ2 1214 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 ARNTL2Q8WYA1 636 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 TNPO1Q92973 898 aaKnown RBP7.99□□□□□ -1.13
VPS13A-201ENST00000355766 BRF1Q92994 677 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 UIMC1Q96RL1 719 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 SLC9A7Q96T83 725 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 FAM129BQ96TA1 746 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 SEMA6CQ9H3T2 930 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 NPHS2Q9NP85 383 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 RAD18Q9NS91 495 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 FAM105AQ9NUU6 356 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 PPP1R9AQ9ULJ8 1098 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.99□□□□□ -1.13
VPS13A-201ENST00000355766 RNF114Q9Y508 228 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 MYH1P12882 1939 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 PARP14Q460N5 1801 aa7.99□□□□□ -1.13
VPS13A-201ENST00000355766 PLIN4Q96Q06 1357 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 ERICH2A1L162 156 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 NDUFB5O43674 189 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 STX6O43752 255 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 B4GALT4O60513 344 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 LPXNO60711 386 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 CPNE3O75131 537 aaKnown RBP7.98□□□□□ -1.13
VPS13A-201ENST00000355766 CABYRO75952 493 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 CALM1P0DP23 149 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 CALM2P0DP24 149 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 CALM3P0DP25 149 aa7.98□□□□□ -1.13
VPS13A-201ENST00000355766 ALADP13716 330 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms