RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ITGB3BPQ13352 177 aaPredicted RBP13.37□□□□□ -0.27
COL6A3-203ENST00000353578 MMGT1Q8N4V1 131 aa13.37□□□□□ -0.27
COL6A3-203ENST00000353578 GRPEL2Q8TAA5 225 aa13.37□□□□□ -0.27
COL6A3-203ENST00000353578 CEP44Q9C0F1 390 aa13.37□□□□□ -0.27
COL6A3-203ENST00000353578 WBP11Q9Y2W2 641 aaKnown RBP13.37□□□□□ -0.27
COL6A3-203ENST00000353578 RPAP1Q9BWH6 1393 aaPredicted RBP13.37□□□□□ -0.27
COL6A3-203ENST00000353578 H3BNX3 289 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 H7C0C1 242 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 BCL10O95999 233 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 NR2F2P24468 414 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 ATP5OP48047 213 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 RCN1Q15293 331 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 ZC3H12BQ5HYM0 836 aaKnown RBP13.36□□□□□ -0.27
COL6A3-203ENST00000353578 LENG1Q96BZ8 264 aaPredicted RBP13.36□□□□□ -0.27
COL6A3-203ENST00000353578 DEPDC7Q96QD5 511 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 MOV10Q9HCE1 1003 aaKnown RBP13.36□□□□□ -0.27
COL6A3-203ENST00000353578 DDX56Q9NY93 547 aaKnown RBP13.36□□□□□ -0.27
COL6A3-203ENST00000353578 SQORQ9Y6N5 450 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 MYH3P11055 1940 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 TRIM72Q6ZMU5 477 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 SERPINB12Q96P63 405 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 SERPINB9P50453 376 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 COPAP53621 1224 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 SPANXN2Q5MJ10 180 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 TTC39CQ8N584 583 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 UBE2OQ9C0C9 1292 aaKnown RBP13.36□□□□□ -0.27
COL6A3-203ENST00000353578 SAMD9Q5K651 1589 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 BAZ2BQ9UIF8 2168 aaKnown RBP13.36□□□□□ -0.27
COL6A3-203ENST00000353578 CCDC144BQ3MJ40 725 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 HPS3Q969F9 1004 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 EFHD2Q96C19 240 aaPredicted RBP13.36□□□□□ -0.27
COL6A3-203ENST00000353578 SPATA5Q8NB90 893 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 OTUD5Q96G74 571 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 HESX1Q9UBX0 185 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 PRMT1Q99873 361 aaKnown RBP13.36□□□□□ -0.27
COL6A3-203ENST00000353578 NDST4Q9H3R1 872 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 PDZK1P1A8MUH7 402 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 BFSP2Q13515 415 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 SFR1Q86XK3 245 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 G3BP2Q9UN86 482 aaKnown RBP13.36□□□□□ -0.27
COL6A3-203ENST00000353578 SLC9A1P19634 815 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 FAM47EQ6ZV65 393 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 IFNL2Q8IZJ0 200 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 MAGEB18Q96M61 343 aa13.36□□□□□ -0.27
COL6A3-203ENST00000353578 SRPRBQ9Y5M8 271 aaKnown RBP13.36□□□□□ -0.27
COL6A3-203ENST00000353578 WASLO00401 505 aaPredicted RBP13.35□□□□□ -0.27
COL6A3-203ENST00000353578 TNNI1P19237 187 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 SGSM1Q2NKQ1 1148 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 TTC27Q6P3X3 843 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 CCDC36Q8IYA8 594 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 KRT87PA6NCN2 255 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 MOCS3O95396 460 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 RALBP11234 206 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 EPAS1Q99814 870 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 EURLQ9NYK6 297 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 SH3TC1Q8TE82 1336 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 SAGE2PA6NJ88 616 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 TAF4O00268 1085 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 DDR1Q08345 913 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 KRT72Q14CN4 511 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 CENPPQ6IPU0 288 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 ZNF556Q9HAH1 456 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 SH3GLB2Q9NR46 395 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 SMCO2A6NFE2 343 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 ACADVLP49748 655 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 BSPRYQ5W0U4 402 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 ERP27Q96DN0 273 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 MTRF1O75570 445 aaKnown RBP13.35□□□□□ -0.27
COL6A3-203ENST00000353578 ALBP02768 609 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 FAM58BPP0C7Q3 252 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 THOC5Q13769 683 aaKnown RBP13.35□□□□□ -0.27
COL6A3-203ENST00000353578 PKN2Q16513 984 aaKnown RBP13.35□□□□□ -0.27
COL6A3-203ENST00000353578 ZFYVE19Q96K21 471 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 WDR12Q9GZL7 423 aaKnown RBP13.35□□□□□ -0.27
COL6A3-203ENST00000353578 ARHGEF10LQ9HCE6 1279 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 MAN1B1Q9UKM7 699 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 V9GY48 417 aaPredicted RBP13.35□□□□□ -0.27
COL6A3-203ENST00000353578 TPD52L2O43399 206 aaKnown RBP13.35□□□□□ -0.27
COL6A3-203ENST00000353578 CHN1P15882 459 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 KRT20P35900 424 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 ITGA9Q13797 1035 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 SURF1Q15526 300 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 TMEM63BQ5T3F8 832 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 COL23A1Q86Y22 540 aaPredicted RBP13.35□□□□□ -0.27
COL6A3-203ENST00000353578 B3GALT6Q96L58 329 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 NCOA5Q9HCD5 579 aaKnown RBP13.35□□□□□ -0.27
COL6A3-203ENST00000353578 STK36Q9NRP7 1315 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 COPB2P35606 906 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 PTPN12Q05209 780 aaKnown RBP13.35□□□□□ -0.27
COL6A3-203ENST00000353578 PLEKHA7Q6IQ23 1121 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 FAM45BPQ6NSW5 357 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 USP19O94966 1318 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 MROH5Q6ZUA9 1318 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 F8VZ95 297 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 PGM3O95394 542 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 CD19P15391 556 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 C21orf59P57076 290 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 TJAP1Q5JTD0 557 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 AKNAD1Q5T1N1 836 aa13.35□□□□□ -0.27
COL6A3-203ENST00000353578 ALDH8A1Q9H2A2 487 aaPredicted RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms