RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 RUSC1Q9BVN2 902 aa13.34□□□□□ -0.27
SNRNP48-201ENST00000342415 FOXN3O00409 490 aaPredicted RBP13.33□□□□□ -0.27
SNRNP48-201ENST00000342415 COMTP21964 271 aa13.33□□□□□ -0.27
SNRNP48-201ENST00000342415 ALDH1B1P30837 517 aa13.33□□□□□ -0.27
SNRNP48-201ENST00000342415 AARSP49588 968 aaKnown RBP eCLIP13.33□□□□□ -0.271e-5■■□□□ 14
SNRNP48-201ENST00000342415 BASP1P80723 227 aaKnown RBP13.33□□□□□ -0.27
SNRNP48-201ENST00000342415 BRDTQ58F21 947 aaPredicted RBP13.33□□□□□ -0.27
SNRNP48-201ENST00000342415 KDM7AQ6ZMT4 941 aa13.33□□□□□ -0.27
SNRNP48-201ENST00000342415 MAIP1Q8WWC4 291 aa13.33□□□□□ -0.27
SNRNP48-201ENST00000342415 TGS1Q96RS0 853 aaKnown RBP13.33□□□□□ -0.27
SNRNP48-201ENST00000342415 AGPAT1Q99943 283 aa13.33□□□□□ -0.27
SNRNP48-201ENST00000342415 IKZF4Q9H2S9 585 aa13.33□□□□□ -0.27
SNRNP48-201ENST00000342415 SIK3Q9Y2K2 1263 aa13.33□□□□□ -0.27
SNRNP48-201ENST00000342415 GOLGA8RI6L899 631 aa13.33□□□□□ -0.28
SNRNP48-201ENST00000342415 IPO5O00410 1097 aaKnown RBP13.33□□□□□ -0.28
SNRNP48-201ENST00000342415 MTERF2Q49AM1 385 aa13.33□□□□□ -0.28
SNRNP48-201ENST00000342415 IWS1Q96ST2 819 aa13.33□□□□□ -0.28
SNRNP48-201ENST00000342415 ERP44Q9BS26 406 aa13.33□□□□□ -0.28
SNRNP48-201ENST00000342415 NXF1Q9UBU9 619 aaKnown RBP13.33□□□□□ -0.28
SNRNP48-201ENST00000342415 KRT17Q04695 432 aa13.33□□□□□ -0.28
SNRNP48-201ENST00000342415 BYSLQ13895 437 aaKnown RBP13.33□□□□□ -0.28
SNRNP48-201ENST00000342415 COG2Q14746 738 aa13.33□□□□□ -0.28
SNRNP48-201ENST00000342415 MEI1Q5TIA1 1274 aa13.33□□□□□ -0.28
SNRNP48-201ENST00000342415 LRRC34Q8IZ02 419 aa13.33□□□□□ -0.28
SNRNP48-201ENST00000342415 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.33□□□□□ -0.28
SNRNP48-201ENST00000342415 TBC1D16Q8TBP0 767 aa13.33□□□□□ -0.28
SNRNP48-201ENST00000342415 ATG4AQ8WYN0 398 aa13.33□□□□□ -0.28
SNRNP48-201ENST00000342415 CALN1Q9BXU9 219 aa13.33□□□□□ -0.28
SNRNP48-201ENST00000342415 ECT2Q9H8V3 914 aa13.33□□□□□ -0.28
SNRNP48-201ENST00000342415 QTRT2Q9H974 415 aaKnown RBP13.33□□□□□ -0.28
SNRNP48-201ENST00000342415 MAD1L1Q9Y6D9 718 aa13.33□□□□□ -0.28
SNRNP48-201ENST00000342415 PLEKHG2Q9H7P9 1386 aa13.33□□□□□ -0.28
SNRNP48-201ENST00000342415 DIAPH2O60879 1101 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 KRT1P04264 644 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 CASP5P51878 434 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 AADACL2Q6P093 401 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 ZNF526Q8TF50 670 aaPredicted RBP13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 FAM20AQ96MK3 541 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 FAM213AQ9BRX8 229 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 TPX2Q9ULW0 747 aaKnown RBP13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 PRLRP16471 622 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 RASSF2P50749 326 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 AP3B2Q13367 1082 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 EEPD1Q7L9B9 569 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 YIPF3Q9GZM5 350 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 MIF4GDA9UHW6 222 aaKnown RBP13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 NKRFO15226 690 aaKnown RBP eCLIP13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 NDUFB10O96000 172 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 POLGP54098 1239 aaPredicted RBP13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 KCNMA1Q12791 1236 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 FGFBP2Q9BYJ0 223 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 SEMA4AQ9H3S1 761 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 APEX2Q9UBZ4 518 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 MAGED2Q9UNF1 606 aaPredicted RBP13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 HSPA6P17066 643 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 CHRNA3P32297 505 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 MSH2P43246 934 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 SARNPP82979 210 aaKnown RBP13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 CYB5D1Q6P9G0 228 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 BARGINQ6ZT62 677 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 C4orf33Q8N1A6 199 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 CPA5Q8WXQ8 436 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 TNFRSF25Q93038 417 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 RAB3IPQ96QF0 476 aaPredicted RBP13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 PI4K2AQ9BTU6 479 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 TMEM206Q9H813 350 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 ZWILCHQ9H900 591 aa13.32□□□□□ -0.28
SNRNP48-201ENST00000342415 TULP2O00295 520 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 CFAP157Q5JU67 520 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 TMEM179Q6ZVK1 233 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 EPM2AIP1Q7L775 607 aaPredicted RBP13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 ZBTB33Q86T24 672 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 STK33Q9BYT3 514 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 COA1Q9GZY4 146 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 ADAM22Q9P0K1 906 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 MMP10P09238 476 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 PLS3P13797 630 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 EDRF1Q3B7T1 1238 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 TMEM270Q6UE05 265 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 DAGLBQ8NCG7 672 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 PPP1R16BQ96T49 567 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 TMBIM4Q9HC24 238 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 GINM1Q9NU53 330 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 PPP1R9AQ9ULJ8 1098 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 MON2Q7Z3U7 1717 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 CIB2O75838 187 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 EYA4O95677 639 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 PRELPP51888 382 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 PSMD6Q15008 389 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 CC2D2BQ6DHV5 1058 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 CYFIP1Q7L576 1253 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 SEPT12Q8IYM1 358 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 SPIRE2Q8WWL2 714 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 SHISA4Q96DD7 197 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 KLF6Q99612 283 aaPredicted RBP13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 MMTAG2Q9BU76 263 aaKnown RBP13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 ACP6Q9NPH0 428 aa13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 NOP53Q9NZM5 478 aaKnown RBP13.31□□□□□ -0.28
SNRNP48-201ENST00000342415 RICTORQ6R327 1708 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms