RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 IRF7Q92985 503 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 ANGPTL3Q9Y5C1 460 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 TMEM110-MUSTN1A8MSY1 372 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 NFKBIEO00221 500 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 ERN1O75460 977 aaKnown RBP9.06□□□□□ -0.96
HMGB1-203ENST00000341423 PRKCBP05771 671 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 TCF7P36402 384 aaPredicted RBP9.06□□□□□ -0.96
HMGB1-203ENST00000341423 C10orf120Q5SQS8 335 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 DACT2Q5SW24 774 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.06□□□□□ -0.96
HMGB1-203ENST00000341423 NEK11Q8NG66 645 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 LMBR1Q8WVP7 490 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 BHMT2Q9H2M3 363 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 KIAA1586Q9HCI6 787 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 NRIP1P48552 1158 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 ACLYP53396 1101 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 PIGKQ92643 395 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 L3MBTL3Q96JM7 780 aaPredicted RBP9.06□□□□□ -0.96
HMGB1-203ENST00000341423 IL12RB2Q99665 862 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 RSAD1Q9HA92 442 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 PLXNC1O60486 1568 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 ABCC12Q96J65 1359 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 TRAV19A0A0A6YYK7 116 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 FAM47E-STBD1D6RA91 191 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 CLGNO14967 610 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 NFATC1O95644 943 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 ADH1CP00326 375 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 F13A1P00488 732 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 HTR1BP28222 390 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 GPC3P51654 580 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 OAZ1P54368 228 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 HIC1Q14526 733 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 SBK1Q52WX2 424 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 C6orf132Q5T0Z8 1188 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 FAM177A1Q8N128 213 aaPredicted RBP9.05□□□□□ -0.96
HMGB1-203ENST00000341423 MED1Q15648 1581 aaPredicted RBP9.05□□□□□ -0.96
HMGB1-203ENST00000341423 PHLPP1O60346 1717 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 H3BM21 787 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 GLUD2P49448 558 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 DENND2CQ68D51 928 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 DNAJB3Q8WWF6 145 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 CARD14Q9BXL6 1004 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 HMBSP08397 361 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 TM4SF1P30408 202 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 PTPN5P54829 565 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 SARNPP82979 210 aaKnown RBP9.05□□□□□ -0.96
HMGB1-203ENST00000341423 ARHGAP29Q52LW3 1261 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 NFRKBQ6P4R8 1299 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 DYMQ7RTS9 669 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 SMAP1Q8IYB5 467 aaPredicted RBP9.05□□□□□ -0.96
HMGB1-203ENST00000341423 SAMD3Q8N6K7 520 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 CEP95Q96GE4 821 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 TBC1D7Q9P0N9 293 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 VPS54Q9P1Q0 977 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 ITIH6Q6UXX5 1313 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 PHF20L1A8MW92 1017 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 H0Y626 953 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 ERVK-10P10266 1014 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 PNPLA4P41247 253 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 SERPINA13PQ6UXR4 307 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 FANCBQ8NB91 859 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 MNS1Q8NEH6 495 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 FANCFQ9NPI8 374 aa9.05□□□□□ -0.96
HMGB1-203ENST00000341423 hCG_1642624A0A1W2PR95 340 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 ONECUT3O60422 494 aaPredicted RBP9.04□□□□□ -0.96
HMGB1-203ENST00000341423 AMD1P17707 334 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 CDC25CP30307 473 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 SEMA3FQ13275 785 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 POLD3Q15054 466 aaPredicted RBP9.04□□□□□ -0.96
HMGB1-203ENST00000341423 LCORLQ8N3X6 602 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 ARL8AQ96BM9 186 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 FANCEQ9HB96 536 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 SEPT10Q9P0V9 454 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 MAP1BP46821 2468 aaKnown RBP9.04□□□□□ -0.96
HMGB1-203ENST00000341423 RFX7Q2KHR2 1363 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 APC2O95996 2303 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 RALBP11234 206 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 CREB5Q02930 508 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 PRPF39Q86UA1 669 aaKnown RBP9.04□□□□□ -0.96
HMGB1-203ENST00000341423 ARHGEF26Q96DR7 871 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 CDK5RAP1Q96SZ6 601 aaKnown RBP9.04□□□□□ -0.96
HMGB1-203ENST00000341423 RUVBL2Q9Y230 463 aaKnown RBP9.04□□□□□ -0.96
HMGB1-203ENST00000341423 FZD9O00144 591 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 AARSP49588 968 aaKnown RBP eCLIP9.04□□□□□ -0.96
HMGB1-203ENST00000341423 QRICH1Q2TAL8 776 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 OR6B2Q6IFH4 312 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 TMC5Q6UXY8 1006 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 CNPPD1Q9BV87 410 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 TRMT61BQ9BVS5 477 aaKnown RBP9.04□□□□□ -0.96
HMGB1-203ENST00000341423 TNFSF13BQ9Y275 285 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 CFAP99D6REC4 459 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 JMJD7P0C870 316 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 IL1R1P14778 569 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 SYKP43405 635 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 NNTQ13423 1086 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 SIM2Q14190 667 aaPredicted RBP9.04□□□□□ -0.96
HMGB1-203ENST00000341423 TOGARAM2Q6ZUX3 1019 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 RIOX2Q8IUF8 465 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 HSPH1Q92598 858 aa9.04□□□□□ -0.96
HMGB1-203ENST00000341423 POLR3FQ9H1D9 316 aaPredicted RBP9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms