RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 SUDS3Q9H7L9 328 aaPredicted RBP6.06□□□□□ -1.44
CSDE1-202ENST00000339438 RNPEPL1Q9HAU8 725 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 TCP11L1Q9NUJ3 509 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 SUN2Q9UH99 717 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 PLAGL2Q9UPG8 496 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 PALM3A6NDB9 673 aaPredicted RBP6.06□□□□□ -1.44
CSDE1-202ENST00000339438 TRIM49BA6NDI0 452 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 RBAK-RBAKDNI3L0D1 243 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 RIMBP2O15034 1052 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 RAD17O75943 681 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 GNA14O95837 355 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 CHN1P15882 459 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 ZNF24P17028 368 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 HIBADHP31937 336 aaKnown RBP6.06□□□□□ -1.44
CSDE1-202ENST00000339438 MXRA7P84157 204 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 POU5F1Q01860 360 aaKnown RBP6.06□□□□□ -1.44
CSDE1-202ENST00000339438 ACBD5Q5T8D3 534 aaPredicted RBP6.06□□□□□ -1.44
CSDE1-202ENST00000339438 DUS1LQ6P1R4 473 aaKnown RBP6.06□□□□□ -1.44
CSDE1-202ENST00000339438 TMEM154Q6P9G4 183 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 DDX42Q86XP3 938 aaKnown RBP eCLIP6.06□□□□□ -1.44
CSDE1-202ENST00000339438 NRG4Q8WWG1 115 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 ZNF333Q96JL9 665 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 PTPRDP23468 1912 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 DNAJC25-GNG10A0A024R161 153 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 M0R2N6 131 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 ATP2A1O14983 1001 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 USP17L8P0C7I0 530 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 PRCPP42785 496 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 RNASELQ05823 741 aaKnown RBP6.06□□□□□ -1.44
CSDE1-202ENST00000339438 NBPF12Q5TAG4 269 aaPredicted RBP6.06□□□□□ -1.44
CSDE1-202ENST00000339438 SPRYD7Q5W111 196 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 CCSAPQ6IQ19 270 aaPredicted RBP6.06□□□□□ -1.44
CSDE1-202ENST00000339438 CCDC70Q6NSX1 233 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 CPLX4Q7Z7G2 160 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 SESTD1Q86VW0 696 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 SYCP3Q8IZU3 236 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 MIGA1Q8NAN2 632 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 IGDCC4Q8TDY8 1250 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 SH3RF3Q8TEJ3 882 aaPredicted RBP6.06□□□□□ -1.44
CSDE1-202ENST00000339438 AGAP3Q96P47 875 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 GOPCQ9HD26 462 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 PAG1Q9NWQ8 432 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 PNMA2Q9UL42 364 aa6.06□□□□□ -1.44
CSDE1-202ENST00000339438 GRID2IPA4D2P6 1211 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 TMEM88BA6NKF7 163 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 C6orf229H3BNL8 230 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 FGAP02671 866 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 SETSIPP0DME0 302 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 AFMP43652 599 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 PHEXP78562 749 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 LSAMPQ13449 338 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 SEC23AQ15436 765 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 IL17AQ16552 155 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 ECM1Q16610 540 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 MEI1Q5TIA1 1274 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 HGSNATQ68CP4 663 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 GALNT17Q6IS24 598 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 APOA5Q6Q788 366 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 KIAA0825Q8IV33 1275 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 CCDC155Q8N6L0 562 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 ANKS4BQ8N8V4 417 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 USP38Q8NB14 1042 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 ATP8B4Q8TF62 1192 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 OPTNQ96CV9 577 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 TSPAN18Q96SJ8 248 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 KRT12Q99456 494 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 TRIM4Q9C037 500 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 RAB17Q9H0T7 212 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 CNOT10Q9H9A5 744 aaKnown RBP6.05□□□□□ -1.44
CSDE1-202ENST00000339438 MORF4L1Q9UBU8 362 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 BIN2Q9UBW5 565 aaPredicted RBP6.05□□□□□ -1.44
CSDE1-202ENST00000339438 LNPEPQ9UIQ6 1025 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 GGT7Q9UJ14 662 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 FBXL5Q9UKA1 691 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 GREB1Q4ZG55 1949 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 IQCA1LA6NCM1 817 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 PRPF3O43395 683 aaKnown RBP6.05□□□□□ -1.44
CSDE1-202ENST00000339438 PDHA1P08559 390 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 CYLC1P35663 651 aaPredicted RBP6.05□□□□□ -1.44
CSDE1-202ENST00000339438 SKIV2L2P42285 1042 aaKnown RBP6.05□□□□□ -1.44
CSDE1-202ENST00000339438 MPP3Q13368 585 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 MORN1Q5T089 497 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 SLC17A8Q8NDX2 589 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 OXER1Q8TDS5 423 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 EYA3Q99504 573 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 DUSP9Q99956 384 aaKnown RBP6.05□□□□□ -1.44
CSDE1-202ENST00000339438 CRISPLD2Q9H0B8 497 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 CYP39A1Q9NYL5 469 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 RNF14Q9UBS8 474 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 TMCO1Q9UM00 188 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 MYO16Q9Y6X6 1858 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 FAM205CA6NFA0 338 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 CTNND1O60716 968 aaKnown RBP6.05□□□□□ -1.44
CSDE1-202ENST00000339438 RXRAP19793 462 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 HOXC8P31273 242 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 PTDSS1P48651 473 aaKnown RBP6.05□□□□□ -1.44
CSDE1-202ENST00000339438 PAK1Q13153 545 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 NR5A1Q13285 461 aa6.05□□□□□ -1.44
CSDE1-202ENST00000339438 DYNC1I2Q13409 638 aaKnown RBP6.05□□□□□ -1.44
CSDE1-202ENST00000339438 CNPY1Q3B7I2 92 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms