RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 H3BNC9 293 aa17.55■□□□□ 0.4
CLN3-201ENST00000333496 BMP15O95972 392 aa17.55■□□□□ 0.4
CLN3-201ENST00000333496 BMPR1AP36894 532 aa17.55■□□□□ 0.4
CLN3-201ENST00000333496 TFDP1Q14186 410 aa17.55■□□□□ 0.4
CLN3-201ENST00000333496 TWF2Q6IBS0 349 aaKnown RBP17.55■□□□□ 0.4
CLN3-201ENST00000333496 NFKBIZQ9BYH8 718 aa17.55■□□□□ 0.4
CLN3-201ENST00000333496 HCSTQ9UBK5 93 aa17.55■□□□□ 0.4
CLN3-201ENST00000333496 DNM3Q9UQ16 869 aa17.55■□□□□ 0.4
CLN3-201ENST00000333496 TBKBP1A7MCY6 615 aa17.54■□□□□ 0.4
CLN3-201ENST00000333496 GTPBP6O43824 516 aaPredicted RBP17.54■□□□□ 0.4
CLN3-201ENST00000333496 EOMESO95936 686 aa17.54■□□□□ 0.4
CLN3-201ENST00000333496 CTNNB1P35222 781 aa17.54■□□□□ 0.4
CLN3-201ENST00000333496 MBTD1Q05BQ5 628 aa17.54■□□□□ 0.4
CLN3-201ENST00000333496 AMHR2Q16671 573 aa17.54■□□□□ 0.4
CLN3-201ENST00000333496 CLLU1OSQ5K130 101 aa17.54■□□□□ 0.4
CLN3-201ENST00000333496 AK8Q96MA6 479 aa17.54■□□□□ 0.4
CLN3-201ENST00000333496 CASD1Q96PB1 797 aa17.54■□□□□ 0.4
CLN3-201ENST00000333496 PLIN2Q99541 437 aa17.54■□□□□ 0.4
CLN3-201ENST00000333496 ZSCAN16Q9H4T2 348 aaPredicted RBP17.54■□□□□ 0.4
CLN3-201ENST00000333496 FAM105AQ9NUU6 356 aa17.54■□□□□ 0.4
CLN3-201ENST00000333496 INO80B-WBP1J3KQ70 363 aa17.54■□□□□ 0.4
CLN3-201ENST00000333496 TSPAN1O60635 241 aa17.54■□□□□ 0.4
CLN3-201ENST00000333496 GPM6BQ13491 265 aa17.54■□□□□ 0.4
CLN3-201ENST00000333496 ZRSR1Q15695 479 aaKnown RBP17.54■□□□□ 0.4
CLN3-201ENST00000333496 MICALL1Q8N3F8 863 aa17.54■□□□□ 0.4
CLN3-201ENST00000333496 SPRYD3Q8NCJ5 442 aa17.54■□□□□ 0.4
CLN3-201ENST00000333496 LRRC15Q8TF66 581 aa17.54■□□□□ 0.4
CLN3-201ENST00000333496 USP28Q96RU2 1077 aa17.54■□□□□ 0.4
CLN3-201ENST00000333496 LMCD1Q9NZU5 365 aa17.54■□□□□ 0.4
CLN3-201ENST00000333496 RWDD3Q9Y3V2 267 aa17.54■□□□□ 0.4
CLN3-201ENST00000333496 LRRIQ4A6NIV6 560 aa17.53■□□□□ 0.4
CLN3-201ENST00000333496 MEIS3P2A8K0S8 358 aa17.53■□□□□ 0.4
CLN3-201ENST00000333496 ZNF623O75123 536 aa17.53■□□□□ 0.4
CLN3-201ENST00000333496 RB1P06400 928 aa17.53■□□□□ 0.4
CLN3-201ENST00000333496 HSP90AA1P07900 732 aaKnown RBP17.53■□□□□ 0.4
CLN3-201ENST00000333496 MARCKSP29966 332 aaPredicted RBP17.53■□□□□ 0.4
CLN3-201ENST00000333496 CEBPZQ03701 1054 aaKnown RBP17.53■□□□□ 0.4
CLN3-201ENST00000333496 TMEM119Q4V9L6 283 aa17.53■□□□□ 0.4
CLN3-201ENST00000333496 UBXN11Q5T124 520 aa17.53■□□□□ 0.4
CLN3-201ENST00000333496 RINT1Q6NUQ1 792 aa17.53■□□□□ 0.4
CLN3-201ENST00000333496 LRRC55Q6ZSA7 311 aa17.53■□□□□ 0.4
CLN3-201ENST00000333496 CABP7Q86V35 215 aa17.53■□□□□ 0.4
CLN3-201ENST00000333496 RNF169Q8NCN4 708 aa17.53■□□□□ 0.4
CLN3-201ENST00000333496 LPPQ93052 612 aa17.53■□□□□ 0.4
CLN3-201ENST00000333496 TMEM117Q9H0C3 514 aa17.53■□□□□ 0.4
CLN3-201ENST00000333496 CWH43Q9H720 699 aa17.53■□□□□ 0.4
CLN3-201ENST00000333496 PRDM6Q9NQX0 595 aa17.53■□□□□ 0.4
CLN3-201ENST00000333496 TYW1Q9NV66 732 aaKnown RBP17.53■□□□□ 0.4
CLN3-201ENST00000333496 ERLIN2O94905 339 aa17.52■□□□□ 0.4
CLN3-201ENST00000333496 LONP1P36776 959 aaKnown RBP17.52■□□□□ 0.4
CLN3-201ENST00000333496 PCBP1Q15365 356 aaKnown RBP eCLIP17.52■□□□□ 0.4
CLN3-201ENST00000333496 LONRF3Q496Y0 759 aa17.52■□□□□ 0.4
CLN3-201ENST00000333496 CDCA2Q69YH5 1023 aaPredicted RBP17.52■□□□□ 0.4
CLN3-201ENST00000333496 C1orf186Q6ZWK4 172 aa17.52■□□□□ 0.4
CLN3-201ENST00000333496 DAW1Q8N136 415 aa17.52■□□□□ 0.4
CLN3-201ENST00000333496 CPB2Q96IY4 423 aa17.52■□□□□ 0.4
CLN3-201ENST00000333496 RUSC1Q9BVN2 902 aa17.52■□□□□ 0.4
CLN3-201ENST00000333496 NT5C3AQ9H0P0 336 aa17.52■□□□□ 0.4
CLN3-201ENST00000333496 FBXO2Q9UK22 296 aaPredicted RBP17.52■□□□□ 0.4
CLN3-201ENST00000333496 TDRD15B5MCY1 1934 aaKnown RBP17.52■□□□□ 0.39
CLN3-201ENST00000333496 GRM6O15303 877 aa17.51■□□□□ 0.39
CLN3-201ENST00000333496 B4GALT5O43286 388 aa17.51■□□□□ 0.39
CLN3-201ENST00000333496 HOXA2O43364 376 aa17.51■□□□□ 0.39
CLN3-201ENST00000333496 ARF4P18085 180 aaPredicted RBP17.51■□□□□ 0.39
CLN3-201ENST00000333496 PKP1Q13835 747 aa17.51■□□□□ 0.39
CLN3-201ENST00000333496 USP49Q70CQ1 688 aa17.51■□□□□ 0.39
CLN3-201ENST00000333496 KCTD17Q8N5Z5 321 aa17.51■□□□□ 0.39
CLN3-201ENST00000333496 SLC17A8Q8NDX2 589 aa17.51■□□□□ 0.39
CLN3-201ENST00000333496 HELQQ8TDG4 1101 aa17.51■□□□□ 0.39
CLN3-201ENST00000333496 P2RX5Q93086 422 aa17.51■□□□□ 0.39
CLN3-201ENST00000333496 PLVAPQ9BX97 442 aa17.51■□□□□ 0.39
CLN3-201ENST00000333496 PCDHB2Q9Y5E7 798 aa17.51■□□□□ 0.39
CLN3-201ENST00000333496 SKIP12755 728 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 AXLP30530 894 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 UBA7P41226 1012 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 NAMPTP43490 491 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 RAB27AP51159 221 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 SLC12A3P55017 1021 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 MAPK7Q13164 816 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 SPECC1Q5M775 1068 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 MRPL10Q7Z7H8 261 aaKnown RBP17.5■□□□□ 0.39
CLN3-201ENST00000333496 SYT2Q8N9I0 419 aaPredicted RBP17.5■□□□□ 0.39
CLN3-201ENST00000333496 KIFAP3Q92845 792 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 MRPL38Q96DV4 380 aaKnown RBP17.5■□□□□ 0.39
CLN3-201ENST00000333496 CLIC6Q96NY7 704 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 C11orf84Q9BUA3 381 aaPredicted RBP17.5■□□□□ 0.39
CLN3-201ENST00000333496 CSRNP2Q9H175 543 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 FZD8Q9H461 694 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 ALG13Q9NP73 1137 aaKnown RBP17.5■□□□□ 0.39
CLN3-201ENST00000333496 PLAGL2Q9UPG8 496 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 SRPRBQ9Y5M8 271 aaKnown RBP17.5■□□□□ 0.39
CLN3-201ENST00000333496 TTLL13PA6NNM8 815 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 SLC26A4O43511 780 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 HIP1RO75146 1068 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 EDN1P05305 212 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 ITGB1P05556 798 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 CAMK1Q14012 370 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 FOXD4L5Q5VV16 416 aaPredicted RBP17.5■□□□□ 0.39
CLN3-201ENST00000333496 NOTUMQ6P988 496 aa17.5■□□□□ 0.39
CLN3-201ENST00000333496 AGMOQ6ZNB7 445 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms