RNA–Protein interactions for RNA: ENST00000304494.9

CDKN2A-201, Transcript of cyclin dependent kinase inhibitor 2A, humanhuman

TSL 1 (best) BASIC

Gene CDKN2A, Length 1,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN2A-201ENST00000304494 UBE3AQ05086 875 aa29.39■■■□□ 2.3
CDKN2A-201ENST00000304494 CLLU1OSQ5K130 101 aa29.39■■■□□ 2.3
CDKN2A-201ENST00000304494 POTEGQ6S5H5 508 aa29.39■■■□□ 2.3
CDKN2A-201ENST00000304494 THNSL1Q8IYQ7 743 aa29.39■■■□□ 2.3
CDKN2A-201ENST00000304494 MCPH1Q8NEM0 835 aa29.39■■■□□ 2.3
CDKN2A-201ENST00000304494 POF1BQ8WVV4 589 aa29.39■■■□□ 2.3
CDKN2A-201ENST00000304494 PPP2R3CQ969Q6 453 aa29.39■■■□□ 2.3
CDKN2A-201ENST00000304494 MRPL9Q9BYD2 267 aaKnown RBP29.39■■■□□ 2.3
CDKN2A-201ENST00000304494 A0A087WWV3 80 aa29.38■■■□□ 2.29
CDKN2A-201ENST00000304494 USO1O60763 962 aaKnown RBP29.38■■■□□ 2.29
CDKN2A-201ENST00000304494 PTENP60484 403 aa29.38■■■□□ 2.29
CDKN2A-201ENST00000304494 IFNLR1Q8IU57 520 aaPredicted RBP29.38■■■□□ 2.29
CDKN2A-201ENST00000304494 HELQQ8TDG4 1101 aa29.38■■■□□ 2.29
CDKN2A-201ENST00000304494 PABPC5Q96DU9 382 aaKnown RBP29.38■■■□□ 2.29
CDKN2A-201ENST00000304494 ZNF623O75123 536 aa29.37■■■□□ 2.29
CDKN2A-201ENST00000304494 DNAJB1P25685 340 aa29.37■■■□□ 2.29
CDKN2A-201ENST00000304494 PRPHP41219 470 aa29.37■■■□□ 2.29
CDKN2A-201ENST00000304494 NCBP1Q09161 790 aaKnown RBP29.37■■■□□ 2.29
CDKN2A-201ENST00000304494 CAPSQ13938 189 aa29.37■■■□□ 2.29
CDKN2A-201ENST00000304494 CAMK1Q14012 370 aa29.37■■■□□ 2.29
CDKN2A-201ENST00000304494 LRRC55Q6ZSA7 311 aa29.37■■■□□ 2.29
CDKN2A-201ENST00000304494 PGBD4Q96DM1 585 aa29.37■■■□□ 2.29
CDKN2A-201ENST00000304494 UHRF1Q96T88 793 aaPredicted RBP29.37■■■□□ 2.29
CDKN2A-201ENST00000304494 NFKBIZQ9BYH8 718 aa29.37■■■□□ 2.29
CDKN2A-201ENST00000304494 POLR3FQ9H1D9 316 aaPredicted RBP29.37■■■□□ 2.29
CDKN2A-201ENST00000304494 EIF4ENIF1Q9NRA8 985 aaKnown RBP29.37■■■□□ 2.29
CDKN2A-201ENST00000304494 HCSTQ9UBK5 93 aa29.37■■■□□ 2.29
CDKN2A-201ENST00000304494 FGF18O76093 207 aa29.36■■■□□ 2.29
CDKN2A-201ENST00000304494 CSPG5O95196 566 aa29.36■■■□□ 2.29
CDKN2A-201ENST00000304494 KCNA5P22460 613 aa29.36■■■□□ 2.29
CDKN2A-201ENST00000304494 AXLP30530 894 aa29.36■■■□□ 2.29
CDKN2A-201ENST00000304494 CCT6AP40227 531 aaKnown RBP29.36■■■□□ 2.29
CDKN2A-201ENST00000304494 COL19A1Q14993 1142 aa29.36■■■□□ 2.29
CDKN2A-201ENST00000304494 IGSF22Q8N9C0 903 aa29.36■■■□□ 2.29
CDKN2A-201ENST00000304494 ASAP3Q8TDY4 903 aa29.36■■■□□ 2.29
CDKN2A-201ENST00000304494 ZNF558Q96NG5 402 aa29.36■■■□□ 2.29
CDKN2A-201ENST00000304494 ARHGEF35A5YM69 484 aa29.35■■■□□ 2.29
CDKN2A-201ENST00000304494 INO80B-WBP1J3KQ70 363 aa29.35■■■□□ 2.29
CDKN2A-201ENST00000304494 GLRA2P23416 452 aa29.35■■■□□ 2.29
CDKN2A-201ENST00000304494 HOXA11P31270 313 aaPredicted RBP29.35■■■□□ 2.29
CDKN2A-201ENST00000304494 PPM1AP35813 382 aa29.35■■■□□ 2.29
CDKN2A-201ENST00000304494 LEXMQ3ZCV2 418 aa29.35■■■□□ 2.29
CDKN2A-201ENST00000304494 LARP1BQ659C4 914 aaKnown RBP29.35■■■□□ 2.29
CDKN2A-201ENST00000304494 GLB1LQ6UWU2 654 aa29.35■■■□□ 2.29
CDKN2A-201ENST00000304494 DTHD1Q6ZMT9 781 aa29.35■■■□□ 2.29
CDKN2A-201ENST00000304494 PCDHB2Q9Y5E7 798 aa29.35■■■□□ 2.29
CDKN2A-201ENST00000304494 KCNT2Q6UVM3 1135 aa29.34■■■□□ 2.29
CDKN2A-201ENST00000304494 LZTS1Q9Y250 596 aa29.34■■■□□ 2.29
CDKN2A-201ENST00000304494 CUL9Q8IWT3 2517 aa29.34■■■□□ 2.29
CDKN2A-201ENST00000304494 TNFRSF10AO00220 468 aa29.33■■■□□ 2.29
CDKN2A-201ENST00000304494 TSPAN1O60635 241 aa29.33■■■□□ 2.29
CDKN2A-201ENST00000304494 PLCB3Q01970 1234 aa29.33■■■□□ 2.29
CDKN2A-201ENST00000304494 HYAL1Q12794 435 aa29.33■■■□□ 2.29
CDKN2A-201ENST00000304494 CUL4AQ13619 759 aa29.33■■■□□ 2.29
CDKN2A-201ENST00000304494 KRT79Q5XKE5 535 aa29.33■■■□□ 2.29
CDKN2A-201ENST00000304494 PADI6Q6TGC4 694 aa29.33■■■□□ 2.29
CDKN2A-201ENST00000304494 EP400NLQ6ZTU2 488 aa29.33■■■□□ 2.29
CDKN2A-201ENST00000304494 MAEAQ7L5Y9 396 aa29.33■■■□□ 2.29
CDKN2A-201ENST00000304494 CNNM3Q8NE01 707 aa29.33■■■□□ 2.29
CDKN2A-201ENST00000304494 SNX29Q8TEQ0 813 aa29.33■■■□□ 2.29
CDKN2A-201ENST00000304494 LPPQ93052 612 aa29.33■■■□□ 2.29
CDKN2A-201ENST00000304494 CCDC51Q96ER9 411 aa29.33■■■□□ 2.29
CDKN2A-201ENST00000304494 TLR9Q9NR96 1032 aa29.33■■■□□ 2.29
CDKN2A-201ENST00000304494 CLDND1Q9NY35 253 aa29.33■■■□□ 2.29
CDKN2A-201ENST00000304494 PUF60Q9UHX1 559 aaKnown RBP29.33■■■□□ 2.29
CDKN2A-201ENST00000304494 CARNS1A5YM72 827 aa29.32■■■□□ 2.28
CDKN2A-201ENST00000304494 KRT17Q04695 432 aa29.32■■■□□ 2.28
CDKN2A-201ENST00000304494 MBTD1Q05BQ5 628 aa29.32■■■□□ 2.28
CDKN2A-201ENST00000304494 PDE12Q6L8Q7 609 aaKnown RBP29.32■■■□□ 2.28
CDKN2A-201ENST00000304494 NOTUMQ6P988 496 aa29.32■■■□□ 2.28
CDKN2A-201ENST00000304494 MRPL10Q7Z7H8 261 aaKnown RBP29.32■■■□□ 2.28
CDKN2A-201ENST00000304494 GPRC5CQ9NQ84 441 aa29.32■■■□□ 2.28
CDKN2A-201ENST00000304494 KIAA1024Q9UPX6 916 aa29.32■■■□□ 2.28
CDKN2A-201ENST00000304494 ATG2AQ2TAZ0 1938 aa29.32■■■□□ 2.28
CDKN2A-201ENST00000304494 CNTNAP2Q9UHC6 1331 aa29.31■■■□□ 2.28
CDKN2A-201ENST00000304494 CYP11B2P19099 503 aa29.31■■■□□ 2.28
CDKN2A-201ENST00000304494 IRS1P35568 1242 aa29.31■■■□□ 2.28
CDKN2A-201ENST00000304494 ATP2C1P98194 919 aaPredicted RBP29.31■■■□□ 2.28
CDKN2A-201ENST00000304494 PUS10Q3MIT2 529 aaKnown RBP29.31■■■□□ 2.28
CDKN2A-201ENST00000304494 LONRF3Q496Y0 759 aa29.31■■■□□ 2.28
CDKN2A-201ENST00000304494 NOMO2Q5JPE7 1267 aa29.31■■■□□ 2.28
CDKN2A-201ENST00000304494 UBXN11Q5T124 520 aa29.31■■■□□ 2.28
CDKN2A-201ENST00000304494 MICAL1Q8TDZ2 1067 aa29.31■■■□□ 2.28
CDKN2A-201ENST00000304494 MRPS27Q92552 414 aaKnown RBP29.31■■■□□ 2.28
CDKN2A-201ENST00000304494 SPG21Q9NZD8 308 aa29.31■■■□□ 2.28
CDKN2A-201ENST00000304494 PLXNA4Q9HCM2 1894 aa29.3■■■□□ 2.28
CDKN2A-201ENST00000304494 LRRIQ4A6NIV6 560 aa29.3■■■□□ 2.28
CDKN2A-201ENST00000304494 ALDH7A1P49419 539 aaKnown RBP29.3■■■□□ 2.28
CDKN2A-201ENST00000304494 ECM1Q16610 540 aa29.3■■■□□ 2.28
CDKN2A-201ENST00000304494 CTC1Q2NKJ3 1217 aa29.3■■■□□ 2.28
CDKN2A-201ENST00000304494 BHMT2Q9H2M3 363 aa29.3■■■□□ 2.28
CDKN2A-201ENST00000304494 DDX19AQ9NUU7 478 aaKnown RBP29.3■■■□□ 2.28
CDKN2A-201ENST00000304494 MUC3AQ02505 3323 aa29.3■■■□□ 2.28
CDKN2A-201ENST00000304494 OFD1O75665 1012 aa29.29■■■□□ 2.28
CDKN2A-201ENST00000304494 NCLP19338 710 aaKnown RBP29.29■■■□□ 2.28
CDKN2A-201ENST00000304494 RNASELQ05823 741 aaKnown RBP29.29■■■□□ 2.28
CDKN2A-201ENST00000304494 ZBTB8OSQ8IWT0 167 aa29.29■■■□□ 2.28
CDKN2A-201ENST00000304494 GADD45GIP1Q8TAE8 222 aaPredicted RBP29.29■■■□□ 2.28
CDKN2A-201ENST00000304494 URGCPQ8TCY9 931 aa29.29■■■□□ 2.28
CDKN2A-201ENST00000304494 IGFLR1Q9H665 355 aa29.29■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms