RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 CTNND2Q9UQB3 1225 aa5.14□□□□□ -1.59
CSMD3-201ENST00000297405 NAIPQ13075 1403 aa5.14□□□□□ -1.59
CSMD3-201ENST00000297405 ASXL2Q76L83 1435 aa5.14□□□□□ -1.59
CSMD3-201ENST00000297405 DDHD2O94830 711 aa5.14□□□□□ -1.59
CSMD3-201ENST00000297405 ATF6P18850 670 aa5.14□□□□□ -1.59
CSMD3-201ENST00000297405 IQCB1Q15051 598 aa5.14□□□□□ -1.59
CSMD3-201ENST00000297405 DCAF17Q5H9S7 520 aaPredicted RBP5.14□□□□□ -1.59
CSMD3-201ENST00000297405 TMEM154Q6P9G4 183 aa5.14□□□□□ -1.59
CSMD3-201ENST00000297405 HDAC11Q96DB2 347 aa5.14□□□□□ -1.59
CSMD3-201ENST00000297405 FAM161BQ96MY7 647 aa5.14□□□□□ -1.59
CSMD3-201ENST00000297405 ATP8A1Q9Y2Q0 1164 aa5.14□□□□□ -1.59
CSMD3-201ENST00000297405 CDK13Q14004 1512 aaKnown RBP5.14□□□□□ -1.59
CSMD3-201ENST00000297405 SPHKAPQ2M3C7 1700 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 ZBBXA8MT70 800 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 HAUS5O94927 633 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 PSMC6P62333 389 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 TNFAIP2Q03169 654 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 EFTUD2Q15029 972 aaKnown RBP eCLIP5.13□□□□□ -1.59
CSMD3-201ENST00000297405 TMEM63BQ5T3F8 832 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 TAF2Q6P1X5 1199 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 WDR93Q6P2C0 686 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 ULK2Q8IYT8 1036 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 PPP2R3CQ969Q6 453 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 TMEM51Q9NW97 253 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 TMED5Q9Y3A6 229 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 HOXB7P09629 217 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 JAK1P23458 1154 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 AK2P54819 239 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 BEND6Q5SZJ8 279 aaPredicted RBP5.13□□□□□ -1.59
CSMD3-201ENST00000297405 KRT25Q7Z3Z0 450 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 AHI1Q8N157 1196 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 USP13Q92995 863 aaPredicted RBP5.13□□□□□ -1.59
CSMD3-201ENST00000297405 RBM41Q96IZ5 413 aaKnown RBP5.13□□□□□ -1.59
CSMD3-201ENST00000297405 LBHD1Q9BQE6 289 aaPredicted RBP5.13□□□□□ -1.59
CSMD3-201ENST00000297405 ANKIB1Q9P2G1 1089 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 RWDD2AQ9UIY3 292 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 KIF13BQ9NQT8 1826 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 NPR3P17342 541 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 SPDYCQ5MJ68 293 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 KIAA0408Q6ZU52 694 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 OTUD6AQ7L8S5 288 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 TTLL11Q8NHH1 800 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 KLHL4Q9C0H6 718 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 C19orf44Q9H6X5 657 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 FAM170AA1A519 330 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 SERPING1P05155 500 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 PGM1P36871 562 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 RABGAP1LQ5R372 815 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 KCTD16Q68DU8 428 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 DLG3Q92796 817 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 PTPDC1A2A3K4 754 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 ZBED1O96006 694 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 TAP1Q03518 808 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 ZC2HC1CQ53FD0 456 aaPredicted RBP5.13□□□□□ -1.59
CSMD3-201ENST00000297405 CREB3L3Q68CJ9 461 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 CCDC149Q6ZUS6 474 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 MIEF2Q96C03 454 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 C1orf115Q9H7X2 142 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 DENND2AQ9ULE3 1009 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 MAPRE3Q9UPY8 281 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 SNPHO15079 494 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 PPP6R2O75170 966 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 PDE6AP16499 860 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 COPS2P61201 443 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 PDCLQ13371 301 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 SDE2Q6IQ49 451 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 TRIM50Q86XT4 487 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 TRIM62Q9BVG3 475 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 TEX46H3BTG2 121 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 GTPBP6O43824 516 aaPredicted RBP5.13□□□□□ -1.59
CSMD3-201ENST00000297405 IMPDH2P12268 514 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 MYL4P12829 197 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 F8A1P23610 371 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 CCNCP24863 283 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 NAPAP54920 295 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 COPZ1P61923 177 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 SH3KBP1Q96B97 665 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 ZNF184Q99676 751 aaPredicted RBP5.13□□□□□ -1.59
CSMD3-201ENST00000297405 KRCC1Q9NPI7 259 aaPredicted RBP5.13□□□□□ -1.59
CSMD3-201ENST00000297405 C1orf112Q9NSG2 853 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 DUOX2Q9NRD8 1548 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 MORC3Q14149 939 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 RASA3Q14644 834 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 UGP2Q16851 508 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 TBC1D1Q86TI0 1168 aaPredicted RBP5.13□□□□□ -1.59
CSMD3-201ENST00000297405 RBM46Q8TBY0 533 aaKnown RBP5.13□□□□□ -1.59
CSMD3-201ENST00000297405 EURLQ9NYK6 297 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 DLGAP2Q9P1A6 1054 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 A0A087WXM4 84 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 METTL21EPA6NDL7 271 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 MINDY4BA8MYZ0 360 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 hCG_1984214I3L0E3 225 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 FAM200BP0CF97 657 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 VAV1P15498 845 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 MSR1P21757 451 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 USP14P54578 494 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 MAPK11Q15759 364 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 PRMT9Q6P2P2 845 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 KRT26Q7Z3Y9 468 aa5.13□□□□□ -1.59
CSMD3-201ENST00000297405 SPAG16Q8N0X2 631 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms