RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 PALMO75781 387 aa14.07□□□□□ -0.16
SPTLC1-201ENST00000262554 NPTX2P47972 431 aa14.07□□□□□ -0.16
SPTLC1-201ENST00000262554 VSNL1P62760 191 aa14.07□□□□□ -0.16
SPTLC1-201ENST00000262554 ITIH3Q06033 890 aa14.07□□□□□ -0.16
SPTLC1-201ENST00000262554 DRAP1Q14919 205 aaPredicted RBP14.07□□□□□ -0.16
SPTLC1-201ENST00000262554 SWSAP1Q6NVH7 229 aa14.07□□□□□ -0.16
SPTLC1-201ENST00000262554 MIS18BP1Q6P0N0 1132 aa14.07□□□□□ -0.16
SPTLC1-201ENST00000262554 DNERQ8NFT8 737 aa14.07□□□□□ -0.16
SPTLC1-201ENST00000262554 COG1Q8WTW3 980 aa14.07□□□□□ -0.16
SPTLC1-201ENST00000262554 TLR10Q9BXR5 811 aa14.07□□□□□ -0.16
SPTLC1-201ENST00000262554 FUT8Q9BYC5 575 aa14.07□□□□□ -0.16
SPTLC1-201ENST00000262554 KMT5AQ9NQR1 393 aa14.07□□□□□ -0.16
SPTLC1-201ENST00000262554 ADARB2Q9NS39 739 aaKnown RBP14.07□□□□□ -0.16
SPTLC1-201ENST00000262554 TBX20Q9UMR3 447 aa14.07□□□□□ -0.16
SPTLC1-201ENST00000262554 PCDHGC5Q9Y5F6 944 aa14.07□□□□□ -0.16
SPTLC1-201ENST00000262554 EMSYQ7Z589 1322 aa14.07□□□□□ -0.16
SPTLC1-201ENST00000262554 PAPPA2Q9BXP8 1791 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 NCK2O43639 380 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 ZNF862O60290 1169 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 EVI5O60447 810 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 DDNO94850 711 aaPredicted RBP14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 PAFAH1B1P43034 410 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 ACTR2P61160 394 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 STXBP2Q15833 593 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 BEND6Q5SZJ8 279 aaPredicted RBP14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 SULF1Q8IWU6 871 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 ANKRD35Q8N283 1001 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 TMEM161BQ8NDZ6 487 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 MCPH1Q8NEM0 835 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 SPIRE2Q8WWL2 714 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 VTI1AQ96AJ9 217 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 RNF25Q96BH1 459 aaPredicted RBP14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 FBXO40Q9UH90 709 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 PFASO15067 1338 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 A0A0G2JMZ2 1700 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 EIF3JO75822 258 aaKnown RBP14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 DGAT1O75907 488 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 STBD1O95210 358 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 PLA2G4AP47712 749 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 DLG4P78352 724 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 SP4Q02446 784 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 C2orf54Q08AI8 447 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 TREML2Q5T2D2 321 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 ABHD15Q6UXT9 468 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 HDXQ7Z353 690 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 ABCB6Q9NP58 842 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 RNF14Q9UBS8 474 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 SEPT9Q9UHD8 586 aaPredicted RBP14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 INTUQ9ULD6 942 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 NENFQ9UMX5 172 aa14.06□□□□□ -0.16
SPTLC1-201ENST00000262554 DENND3A2RUS2 1198 aa14.05□□□□□ -0.16
SPTLC1-201ENST00000262554 SASH3O75995 380 aa14.05□□□□□ -0.16
SPTLC1-201ENST00000262554 H2AFZP0C0S5 128 aa14.05□□□□□ -0.16
SPTLC1-201ENST00000262554 SUPT20HL2P0C7V6 817 aa14.05□□□□□ -0.16
SPTLC1-201ENST00000262554 CXCR5P32302 372 aa14.05□□□□□ -0.16
SPTLC1-201ENST00000262554 IREB2P48200 963 aaKnown RBP14.05□□□□□ -0.16
SPTLC1-201ENST00000262554 PRKCEQ02156 737 aa14.05□□□□□ -0.16
SPTLC1-201ENST00000262554 GABPB1Q06547 395 aaPredicted RBP14.05□□□□□ -0.16
SPTLC1-201ENST00000262554 MEI1Q5TIA1 1274 aa14.05□□□□□ -0.16
SPTLC1-201ENST00000262554 LBX2Q6XYB7 198 aa14.05□□□□□ -0.16
SPTLC1-201ENST00000262554 H2AFVQ71UI9 128 aa14.05□□□□□ -0.16
SPTLC1-201ENST00000262554 MAP4K3Q8IVH8 894 aa14.05□□□□□ -0.16
SPTLC1-201ENST00000262554 MMGT1Q8N4V1 131 aa14.05□□□□□ -0.16
SPTLC1-201ENST00000262554 LMO3Q8TAP4 145 aa14.05□□□□□ -0.16
SPTLC1-201ENST00000262554 PSMB7Q99436 277 aa14.05□□□□□ -0.16
SPTLC1-201ENST00000262554 NTPCRQ9BSD7 190 aaKnown RBP14.05□□□□□ -0.16
SPTLC1-201ENST00000262554 ATP6V0A4Q9HBG4 840 aa14.05□□□□□ -0.16
SPTLC1-201ENST00000262554 GRID2IPA4D2P6 1211 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 DDX3XO00571 662 aaKnown RBP eCLIP14.04□□□□□ -0.163e-7■■■■□ 23.1
SPTLC1-201ENST00000262554 FTCDO95954 541 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 ICAM3P32942 547 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 ABCD1P33897 745 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 NOP2P46087 812 aaKnown RBP14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 RTP1P59025 263 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 PPP3CAQ08209 521 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 MAP9Q49MG5 647 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 CFAP221Q4G0U5 840 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 XKR3Q5GH77 459 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 PHLDB3Q6NSJ2 640 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 GADL1Q6ZQY3 521 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 RIOX2Q8IUF8 465 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 CCDC60Q8IWA6 550 aaPredicted RBP14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 U2AF1L4Q8WU68 220 aaKnown RBP14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 IFT74Q96LB3 600 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 KIFC3Q9BVG8 833 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 CYP26B1Q9NR63 512 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 IGSF9BQ9UPX0 1349 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 A0A0A6YYK5 440 aaPredicted RBP14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 ADM5C9JUS6 153 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 H0YCG3 227 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 MAP2K7O14733 419 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 PMM2O15305 246 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 SORBS3O60504 671 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 CNGA1P29973 690 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 GCLMP48507 274 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 SNRNP35Q16560 246 aaKnown RBP14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 ARHGAP44Q17R89 818 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 EPC2Q52LR7 807 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 SPATA4Q8NEY3 305 aa14.04□□□□□ -0.16
SPTLC1-201ENST00000262554 SLC30A5Q8TAD4 765 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms