RNA–Protein interactions for RNA: ENST00000257290.9

PDGFRA-201, Transcript of platelet derived growth factor receptor alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFRA, Length 6,576 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-201ENST00000257290 FAM228BP0C875 321 aa7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 COPS2P61201 443 aa7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 VBP1P61758 197 aa7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 ACCSLQ4AC99 568 aa7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 PACS1Q6VY07 963 aa7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 CCDC103Q8IW40 242 aa7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 XAGE3Q8WTP9 111 aa7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 SDCCAG3Q96C92 435 aa7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 ERP27Q96DN0 273 aa7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 FAM170AA1A519 330 aa7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 NCAM2O15394 837 aa7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 ALOX5P09917 674 aa7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 SLC5A1P13866 664 aa7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 PORP16435 677 aaPredicted RBP7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 ANXA13P27216 316 aa7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 NUP62P37198 522 aaPredicted RBP7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 THOP1P52888 689 aa7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 RIPK1Q13546 671 aa7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 ITIH4Q14624 930 aa7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 EMC10Q5UCC4 262 aa7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 RELL1Q8IUW5 271 aa7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 AGAP11Q8TF27 550 aa7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 IFIH1Q9BYX4 1025 aaKnown RBP7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 OSBPL5Q9H0X9 879 aaPredicted RBP7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 AP4S1Q9Y587 144 aa7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 PREX1Q8TCU6 1659 aa7.18□□□□□ -1.26
PDGFRA-201ENST00000257290 TSPAN4O14817 238 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 ADCY6O43306 1168 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 IFIT1P09914 478 aaKnown RBP7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 SP100P23497 879 aaPredicted RBP7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 TRAPPC10P48553 1259 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 ATL3Q6DD88 541 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 RSBN1LQ6PCB5 846 aaPredicted RBP7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 ARHGEF18Q6ZSZ5 1173 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 LRRC20Q8TCA0 184 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 ITPKCQ96DU7 683 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 ZNF285Q96NJ3 590 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 ZBTB3Q9H5J0 574 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 ECHDC1Q9NTX5 307 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 ZBTB40Q9NUA8 1239 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 SLAIN2Q9P270 581 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 STOML2Q9UJZ1 356 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 PRR36Q9H6K5 1346 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 PTCH1Q13635 1447 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 MTSS1O43312 755 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 KLHL41O60662 606 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 SASH3O75995 380 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 FARP2O94887 1054 aaPredicted RBP7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 NAA20P61599 178 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 LRRC36Q1X8D7 754 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 BORAQ6PGQ7 559 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 REXO1Q8N1G1 1221 aaKnown RBP7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 TTC13Q8NBP0 860 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 NACC2Q96BF6 587 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 FERD3LQ96RJ6 166 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 MEIS3Q99687 375 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 VPS16Q9H269 839 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 TRNAU1APQ9NX07 287 aaKnown RBP7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 SOX13Q9UN79 622 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 PCDHB15Q9Y5E8 787 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 COPG1Q9Y678 874 aaKnown RBP7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 RPAP1Q9BWH6 1393 aaPredicted RBP7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 HSPA6P17066 643 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 INPP1P49441 399 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 COPB1P53618 953 aaKnown RBP7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 NLRP12P59046 1061 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 TMEM266Q2M3C6 531 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 BEND3Q5T5X7 828 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 PCGF5Q86SE9 256 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 TSEN34Q9BSV6 310 aaKnown RBP7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 PARP2Q9UGN5 583 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 USP19O94966 1318 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 BTKQ06187 659 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 ARSHQ5FYA8 562 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 RNF220Q5VTB9 566 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 PPP2R2DQ66LE6 453 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 LUZP2Q86TE4 346 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 HDAC2Q92769 488 aaKnown RBP7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 GRAMD1AQ96CP6 724 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 FNBP1Q96RU3 617 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 RNPEPQ9H4A4 650 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 SP140LQ9H930 580 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 FBXO40Q9UH90 709 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 CFAP99D6REC4 459 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 PSMD11O00231 422 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 ATP2A1O14983 1001 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 CRYZL1O95825 349 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 JAK1P23458 1154 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 MARK3P27448 753 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 CARSP49589 748 aaKnown RBP7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 IYDQ6PHW0 289 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 CCDC81Q6ZN84 652 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 LINS1Q8NG48 757 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 PHF21AQ96BD5 680 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 LRRC39Q96DD0 335 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 SLC52A2Q9HAB3 445 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 PCMTD2Q9NV79 361 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 VANGL2Q9ULK5 521 aa7.17□□□□□ -1.26
PDGFRA-201ENST00000257290 FAM25EA8MYX2 175 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms