RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ZNF720Q7Z2F6 126 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 TIAM2Q8IVF5 1701 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 ACRBPQ8NEB7 543 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 AFG1LQ8WV93 481 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 SHISA4Q96DD7 197 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.56□□□□□ -0.4
VPS4A-201ENST00000254950 UNCXA6NJT0 531 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 NKRFO15226 690 aaKnown RBP eCLIP12.56□□□□□ -0.4
VPS4A-201ENST00000254950 KIF11P52732 1056 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 HLTFQ14527 1009 aaKnown RBP eCLIP12.56□□□□□ -0.4
VPS4A-201ENST00000254950 HYIQ5T013 277 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 CDKAL1Q5VV42 579 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 DCUN1D2Q6PH85 259 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 PEX26Q7Z412 305 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 BTBD7Q9P203 1132 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 COL20A1Q9P218 1284 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 VAV3Q9UKW4 847 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 CAPN11Q9UMQ6 739 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 NFASCO94856 1347 aa12.55□□□□□ -0.4
VPS4A-201ENST00000254950 LRRC53A6NM62 1247 aa12.55□□□□□ -0.4
VPS4A-201ENST00000254950 ATP9AO75110 1047 aa12.55□□□□□ -0.4
VPS4A-201ENST00000254950 NPTX2P47972 431 aa12.55□□□□□ -0.4
VPS4A-201ENST00000254950 CPT1AP50416 773 aa12.55□□□□□ -0.4
VPS4A-201ENST00000254950 RPS6KA1Q15418 735 aa12.55□□□□□ -0.4
VPS4A-201ENST00000254950 ZNF484Q5JVG2 852 aa12.55□□□□□ -0.4
VPS4A-201ENST00000254950 SESTD1Q86VW0 696 aa12.55□□□□□ -0.4
VPS4A-201ENST00000254950 ATP8B4Q8TF62 1192 aa12.55□□□□□ -0.4
VPS4A-201ENST00000254950 TOPORSQ9NS56 1045 aaPredicted RBP12.55□□□□□ -0.4
VPS4A-201ENST00000254950 NXF1Q9UBU9 619 aaKnown RBP12.55□□□□□ -0.4
VPS4A-201ENST00000254950 TBX20Q9UMR3 447 aa12.55□□□□□ -0.4
VPS4A-201ENST00000254950 SPATA31C2B4DYI2 1134 aa12.55□□□□□ -0.4
VPS4A-201ENST00000254950 MYCP01106 439 aaPredicted RBP12.55□□□□□ -0.4
VPS4A-201ENST00000254950 RARBP10826 455 aa12.55□□□□□ -0.4
VPS4A-201ENST00000254950 BFSP1Q12934 665 aa12.55□□□□□ -0.4
VPS4A-201ENST00000254950 GNASQ5JWF2 1037 aa12.55□□□□□ -0.4
VPS4A-201ENST00000254950 SOCS4Q8WXH5 440 aa12.55□□□□□ -0.4
VPS4A-201ENST00000254950 TCHHQ07283 1943 aa12.55□□□□□ -0.4
VPS4A-201ENST00000254950 ARAP2Q8WZ64 1704 aa12.55□□□□□ -0.4
VPS4A-201ENST00000254950 ATP2A1O14983 1001 aa12.55□□□□□ -0.4
VPS4A-201ENST00000254950 ZNF18P17022 549 aa12.55□□□□□ -0.4
VPS4A-201ENST00000254950 MRPS9P82933 396 aaKnown RBP12.55□□□□□ -0.4
VPS4A-201ENST00000254950 SMC1AQ14683 1233 aaKnown RBP12.55□□□□□ -0.4
VPS4A-201ENST00000254950 ERO1AQ96HE7 468 aa12.55□□□□□ -0.4
VPS4A-201ENST00000254950 SGIP1Q9BQI5 828 aa12.55□□□□□ -0.4
VPS4A-201ENST00000254950 KIFC3Q9BVG8 833 aa12.55□□□□□ -0.4
VPS4A-201ENST00000254950 INTS2Q9H0H0 1204 aaKnown RBP12.55□□□□□ -0.4
VPS4A-201ENST00000254950 SPTLC3Q9NUV7 552 aa12.55□□□□□ -0.4
VPS4A-201ENST00000254950 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.55□□□□□ -0.4
VPS4A-201ENST00000254950 V9GYY5 206 aaPredicted RBP12.55□□□□□ -0.4
VPS4A-201ENST00000254950 SLC15A5A6NIM6 579 aa12.54□□□□□ -0.4
VPS4A-201ENST00000254950 ZBTB39O15060 712 aa12.54□□□□□ -0.4
VPS4A-201ENST00000254950 KLRC4O43908 158 aa12.54□□□□□ -0.4
VPS4A-201ENST00000254950 SPATA31C1P0DKV0 1188 aa12.54□□□□□ -0.4
VPS4A-201ENST00000254950 CYP27A1Q02318 531 aa12.54□□□□□ -0.4
VPS4A-201ENST00000254950 ITGB3BPQ13352 177 aaPredicted RBP12.54□□□□□ -0.4
VPS4A-201ENST00000254950 SNRNP35Q16560 246 aaKnown RBP12.54□□□□□ -0.4
VPS4A-201ENST00000254950 IPO4Q8TEX9 1081 aaKnown RBP12.54□□□□□ -0.4
VPS4A-201ENST00000254950 MBOAT7Q96N66 472 aa12.54□□□□□ -0.4
VPS4A-201ENST00000254950 CARD6Q9BX69 1037 aa12.54□□□□□ -0.4
VPS4A-201ENST00000254950 ADAMTS1Q9UHI8 967 aa12.54□□□□□ -0.4
VPS4A-201ENST00000254950 IGLV3-22A0A075B6J6 115 aa12.54□□□□□ -0.4
VPS4A-201ENST00000254950 RIOK3O14730 519 aaKnown RBP12.54□□□□□ -0.4
VPS4A-201ENST00000254950 RFX1P22670 979 aa12.54□□□□□ -0.4
VPS4A-201ENST00000254950 NAMPTP43490 491 aa12.54□□□□□ -0.4
VPS4A-201ENST00000254950 NSFP46459 744 aaKnown RBP12.54□□□□□ -0.4
VPS4A-201ENST00000254950 UBL4BQ8N7F7 174 aa12.54□□□□□ -0.4
VPS4A-201ENST00000254950 TARS2Q9BW92 718 aaKnown RBP12.54□□□□□ -0.4
VPS4A-201ENST00000254950 KCNH4Q9UQ05 1017 aa12.54□□□□□ -0.4
VPS4A-201ENST00000254950 PPME1Q9Y570 386 aa12.54□□□□□ -0.4
VPS4A-201ENST00000254950 MAPTP10636 758 aaKnown RBP12.54□□□□□ -0.4
VPS4A-201ENST00000254950 BMP6P22004 513 aa12.54□□□□□ -0.4
VPS4A-201ENST00000254950 FAM110CQ1W6H9 321 aa12.54□□□□□ -0.4
VPS4A-201ENST00000254950 SEL1L2Q5TEA6 688 aa12.54□□□□□ -0.4
VPS4A-201ENST00000254950 C1orf186Q6ZWK4 172 aa12.54□□□□□ -0.4
VPS4A-201ENST00000254950 CCDC50Q8IVM0 306 aa12.54□□□□□ -0.4
VPS4A-201ENST00000254950 FBXL13Q8NEE6 735 aa12.54□□□□□ -0.4
VPS4A-201ENST00000254950 SPATA20Q8TB22 786 aa12.54□□□□□ -0.4
VPS4A-201ENST00000254950 DNAJC19Q96DA6 116 aa12.54□□□□□ -0.4
VPS4A-201ENST00000254950 ERGIC2Q96RQ1 377 aa12.54□□□□□ -0.4
VPS4A-201ENST00000254950 PRMT7Q9NVM4 692 aaPredicted RBP12.54□□□□□ -0.4
VPS4A-201ENST00000254950 GOLGA6L10A6NI86 522 aa12.53□□□□□ -0.4
VPS4A-201ENST00000254950 CYP2C9P11712 490 aa12.53□□□□□ -0.4
VPS4A-201ENST00000254950 FMO5P49326 533 aa12.53□□□□□ -0.4
VPS4A-201ENST00000254950 C10orf76Q5T2E6 689 aa12.53□□□□□ -0.4
VPS4A-201ENST00000254950 TWF2Q6IBS0 349 aaKnown RBP12.53□□□□□ -0.4
VPS4A-201ENST00000254950 CCDC60Q8IWA6 550 aaPredicted RBP12.53□□□□□ -0.4
VPS4A-201ENST00000254950 NAP1L3Q99457 506 aaPredicted RBP12.53□□□□□ -0.4
VPS4A-201ENST00000254950 HESX1Q9UBX0 185 aa12.53□□□□□ -0.4
VPS4A-201ENST00000254950 SAR1BQ9Y6B6 198 aa12.53□□□□□ -0.4
VPS4A-201ENST00000254950 MAST2Q6P0Q8 1798 aa12.53□□□□□ -0.4
VPS4A-201ENST00000254950 BUB1O43683 1085 aa12.53□□□□□ -0.4
VPS4A-201ENST00000254950 GPC3P51654 580 aa12.53□□□□□ -0.4
VPS4A-201ENST00000254950 AP3M2P53677 418 aa12.53□□□□□ -0.4
VPS4A-201ENST00000254950 MYO1EQ12965 1108 aa12.53□□□□□ -0.4
VPS4A-201ENST00000254950 ZNF667Q5HYK9 610 aa12.53□□□□□ -0.4
VPS4A-201ENST00000254950 TINF2Q9BSI4 451 aa12.53□□□□□ -0.4
VPS4A-201ENST00000254950 ST7Q9NRC1 585 aa12.53□□□□□ -0.4
VPS4A-201ENST00000254950 AMFRQ9UKV5 643 aa12.53□□□□□ -0.4
VPS4A-201ENST00000254950 MTUS1Q9ULD2 1270 aa12.53□□□□□ -0.4
VPS4A-201ENST00000254950 NUB1Q9Y5A7 615 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms