RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 EPHA10Q5JZY3 1008 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 LDHDQ86WU2 507 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 G3BP2Q9UN86 482 aaKnown RBP13.63□□□□□ -0.23
USP40-201ENST00000251722 BUB1O43683 1085 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 RAD51Q06609 339 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 KIAA1755Q5JYT7 1200 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 TLK1Q9UKI8 766 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 PCDHB6Q9Y5E3 794 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 MYO3AQ8NEV4 1616 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 MAN1A2O60476 641 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 MARK3P27448 753 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 PHEXP78562 749 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 IL9RQ01113 521 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 RASSF7Q02833 373 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 SNX17Q15036 470 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 IER5Q5VY09 327 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 KLC3Q6P597 504 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 GPR101Q96P66 508 aaPredicted RBP13.63□□□□□ -0.23
USP40-201ENST00000251722 LBHD1Q9BQE6 289 aaPredicted RBP13.63□□□□□ -0.23
USP40-201ENST00000251722 BPIFA3Q9BQP9 254 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 TUBB6Q9BUF5 446 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 SLC38A7Q9NVC3 462 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 CDC23Q9UJX2 597 aa13.63□□□□□ -0.23
USP40-201ENST00000251722 SYNJ2BP-COX16A0A087WUM0 186 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 GSG1L2A8MUP6 293 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 CAV1Q03135 178 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 ZNF483Q8TF39 744 aaPredicted RBP13.62□□□□□ -0.23
USP40-201ENST00000251722 ANKRD7Q92527 254 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 VPS39Q96JC1 886 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 JPH1Q9HDC5 661 aaPredicted RBP13.62□□□□□ -0.23
USP40-201ENST00000251722 CYP26B1Q9NR63 512 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 COX16Q9P0S2 106 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 CCDC188H7C350 402 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 EYA4O95677 639 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 DDX5P17844 614 aaKnown RBP13.62□□□□□ -0.23
USP40-201ENST00000251722 PAPOLAP51003 745 aaKnown RBP13.62□□□□□ -0.23
USP40-201ENST00000251722 GOLGA8SH3BPF8 625 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 DGAT1O75907 488 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 MOCS3O95396 460 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 NR3C1P04150 777 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 ZNF157P51786 506 aaPredicted RBP13.62□□□□□ -0.23
USP40-201ENST00000251722 CORO7P57737 925 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 PPP2R5CQ13362 524 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 LONRF3Q496Y0 759 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 TCP11X2Q5H9J9 407 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 DNAAF3Q8N9W5 541 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 PPP1R2P1Q96PQ5 205 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 SLC16A3O15427 465 aaKnown RBP13.62□□□□□ -0.23
USP40-201ENST00000251722 FCGRTP55899 365 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 KAZNQ674X7 775 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 SKA2Q8WVK7 121 aaPredicted RBP13.62□□□□□ -0.23
USP40-201ENST00000251722 MTFR1LQ9H019 292 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 POLR3FQ9H1D9 316 aaPredicted RBP13.62□□□□□ -0.23
USP40-201ENST00000251722 GABBR1Q9UBS5 961 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 ARIH1Q9Y4X5 557 aaPredicted RBP13.62□□□□□ -0.23
USP40-201ENST00000251722 ADAMTS13Q76LX8 1427 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 GPC4O75487 556 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 HIBCHQ6NVY1 386 aaPredicted RBP13.62□□□□□ -0.23
USP40-201ENST00000251722 C4orf50Q6ZRC1 276 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 GPD1LQ8N335 351 aa13.62□□□□□ -0.23
USP40-201ENST00000251722 KCNQ2O43526 872 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 LRRC41Q15345 812 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 KNOP1Q1ED39 458 aaKnown RBP13.61□□□□□ -0.23
USP40-201ENST00000251722 CEP55Q53EZ4 464 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 SLC10A5Q5PT55 438 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 ITFG2Q969R8 447 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 HDAC11Q96DB2 347 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 KLC2Q9H0B6 622 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 VCPKMTQ9H867 229 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 DDX56Q9NY93 547 aaKnown RBP13.61□□□□□ -0.23
USP40-201ENST00000251722 NBPF26B4DH59 902 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 ZBED1O96006 694 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 CHGBP05060 677 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 CYP2D6P10635 497 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 ESRRGP62508 458 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 ARHGAP22Q7Z5H3 698 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 NBPF15Q8N660 670 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 MARCH10Q8NA82 808 aaPredicted RBP13.61□□□□□ -0.23
USP40-201ENST00000251722 DYDC2Q96IM9 177 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 FAM96AQ9H5X1 160 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 PCDHB8Q9UN66 801 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 GFPT2O94808 682 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 TMCC1O94876 653 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 NTSR2O95665 410 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 EPHB4P54760 987 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 EIF3BP55884 814 aaKnown RBP13.61□□□□□ -0.23
USP40-201ENST00000251722 C16orf86Q6ZW13 317 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 GPRC5AQ8NFJ5 357 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 IQSEC2Q5JU85 1478 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 ALDH1A1P00352 501 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 APOEP02649 317 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 GCLCP48506 637 aaPredicted RBP13.61□□□□□ -0.23
USP40-201ENST00000251722 CPT1AP50416 773 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 LINC00116Q8NCU8 138 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 ZBTB10Q96DT7 871 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 STAMBPL1Q96FJ0 436 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 UBN1Q9NPG3 1134 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 CNGB3Q9NQW8 809 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 MTMR4Q9NYA4 1195 aa13.61□□□□□ -0.23
USP40-201ENST00000251722 RIMS1Q86UR5 1692 aaKnown RBP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms