RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 ABCB11O95342 1321 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 SEC16AO15027 2179 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 KLHL41O60662 606 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 ABCB4P21439 1286 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 KIF19Q2TAC6 998 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 SPOPLQ6IQ16 392 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 BBS7Q8IWZ6 715 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 PCDHA1Q9Y5I3 950 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 MRFAP1Q9Y605 127 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 KIF13AQ9H1H9 1805 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 B4E1Z4 1266 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 ANGPT2O15123 496 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 UFL1O94874 794 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 RCN2Q14257 317 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 NDUFA5Q16718 116 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 DARS2Q6PI48 645 aaKnown RBP6.44□□□□□ -1.38
VPS13D-201ENST00000011700 ZNF280CQ8ND82 737 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 MAML1Q92585 1016 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 COPRSQ9NQ92 184 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 HSD17B4P51659 736 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 PRKCQQ04759 706 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 KCNH2Q12809 1159 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 KCTD2Q14681 263 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 CERKLQ49MI3 558 aaPredicted RBP6.44□□□□□ -1.38
VPS13D-201ENST00000011700 HSP90AA4PQ58FG1 418 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 C1orf146Q5VVC0 180 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 TRAPPC11Q7Z392 1133 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 FAM20AQ96MK3 541 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 PHACTR1Q9C0D0 580 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 EPB41L5Q9HCM4 733 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 IP6K2Q9UHH9 426 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 ATP8A1Q9Y2Q0 1164 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 NPM3O75607 178 aaKnown RBP6.44□□□□□ -1.38
VPS13D-201ENST00000011700 RAPGEF3O95398 923 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 IFNAR1P17181 557 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 CNTFP26441 200 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 MAP4P27816 1152 aaKnown RBP6.44□□□□□ -1.38
VPS13D-201ENST00000011700 HOXD10P28358 340 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 DLGAP5Q15398 846 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 LRIG3Q6UXM1 1119 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 ATL2Q8NHH9 583 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.44□□□□□ -1.381e-6■■□□□ 12.9
VPS13D-201ENST00000011700 BRD8Q9H0E9 1235 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 ERAP1Q9NZ08 941 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 SPEF2Q9C093 1822 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 ZNF532Q9HCE3 1301 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 HEATR1Q9H583 2144 aaKnown RBP6.44□□□□□ -1.38
VPS13D-201ENST00000011700 RNF103-CHMP3A0A140T963 221 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 POTEMA6NI47 508 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 IGF2BP3O00425 579 aaKnown RBP eCLIP6.44□□□□□ -1.38
VPS13D-201ENST00000011700 HSPD1P10809 573 aaKnown RBP6.44□□□□□ -1.38
VPS13D-201ENST00000011700 PPP2R2AP63151 447 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 IRX5P78411 483 aaPredicted RBP6.44□□□□□ -1.38
VPS13D-201ENST00000011700 PREPLQ4J6C6 727 aaPredicted RBP6.44□□□□□ -1.38
VPS13D-201ENST00000011700 XKR9Q5GH70 373 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 POTEHQ6S545 545 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 POTEGQ6S5H5 508 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 ZNF677Q86XU0 584 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 CROCCP3Q8IVE0 287 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 ROPN1BQ9BZX4 212 aaPredicted RBP6.44□□□□□ -1.38
VPS13D-201ENST00000011700 ROPN1Q9HAT0 212 aaPredicted RBP6.44□□□□□ -1.38
VPS13D-201ENST00000011700 INTUQ9ULD6 942 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 XPO1O14980 1071 aaKnown RBP6.44□□□□□ -1.38
VPS13D-201ENST00000011700 CLASP2O75122 1294 aaKnown RBP6.44□□□□□ -1.38
VPS13D-201ENST00000011700 WDR47O94967 919 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 TMPRSS15P98073 1019 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 FAM102BQ5T8I3 360 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 NUDCD3Q8IVD9 361 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 PRDM16Q9HAZ2 1276 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 GAS2O43903 313 aaKnown RBP6.44□□□□□ -1.38
VPS13D-201ENST00000011700 BBOX1O75936 387 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 ABCB1P08183 1280 aaPredicted RBP6.44□□□□□ -1.38
VPS13D-201ENST00000011700 CARSP49589 748 aaKnown RBP6.44□□□□□ -1.38
VPS13D-201ENST00000011700 CRYMQ14894 314 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 EZH2Q15910 746 aaKnown RBP6.44□□□□□ -1.38
VPS13D-201ENST00000011700 SLC30A9Q6PML9 568 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 ANKRD42Q8N9B4 389 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 TMEM35BQ8NCS4 154 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 ALDH8A1Q9H2A2 487 aaPredicted RBP6.44□□□□□ -1.38
VPS13D-201ENST00000011700 TAB2Q9NYJ8 693 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 PTPRTO14522 1441 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 TRAPPC3O43617 180 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 LZTS3O60299 673 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-201ENST00000011700 PRDM1O75626 825 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 ITKQ08881 620 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 KRT33BQ14525 404 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 CHMP6Q96FZ7 201 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 MS4A14Q96JA4 679 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 TMEM237Q96Q45 408 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 MCCC1Q96RQ3 725 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-201ENST00000011700 BFARQ9NZS9 450 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 ZBTB21Q9ULJ3 1066 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 NCKAP5LQ9HCH0 1330 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 MIA3Q5JRA6 1907 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-201ENST00000011700 AGTP01019 485 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 ITGA1P56199 1179 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 IMPG1Q17R60 797 aa6.43□□□□□ -1.38
VPS13D-201ENST00000011700 CDKL3Q8IVW4 592 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-201ENST00000011700 UBXN8O00124 270 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms