RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 MARCH6O60337 910 aa15.6■□□□□ 0.09
LINC00339-211ENST00000641009 SEC24BO95487 1268 aa15.6■□□□□ 0.09
LINC00339-211ENST00000641009 GLP2RO95838 553 aa15.6■□□□□ 0.09
LINC00339-211ENST00000641009 P4HBP07237 508 aaKnown RBP15.6■□□□□ 0.09
LINC00339-211ENST00000641009 ATF7P17544 494 aaPredicted RBP15.6■□□□□ 0.09
LINC00339-211ENST00000641009 KRT2P35908 639 aa15.6■□□□□ 0.09
LINC00339-211ENST00000641009 PBX3P40426 434 aa15.6■□□□□ 0.09
LINC00339-211ENST00000641009 NEK4P51957 841 aa15.6■□□□□ 0.09
LINC00339-211ENST00000641009 FOSBP53539 338 aa15.6■□□□□ 0.09
LINC00339-211ENST00000641009 ERVFC1P60507 584 aa15.6■□□□□ 0.09
LINC00339-211ENST00000641009 SMAD2Q15796 467 aaKnown RBP15.6■□□□□ 0.09
LINC00339-211ENST00000641009 LRRC43Q8N309 656 aa15.6■□□□□ 0.09
LINC00339-211ENST00000641009 EFHBQ8N7U6 833 aa15.6■□□□□ 0.09
LINC00339-211ENST00000641009 NSUN7Q8NE18 718 aaKnown RBP15.6■□□□□ 0.09
LINC00339-211ENST00000641009 TNFRSF25Q93038 417 aa15.6■□□□□ 0.09
LINC00339-211ENST00000641009 NLRP4Q96MN2 994 aa15.6■□□□□ 0.09
LINC00339-211ENST00000641009 C11orf16Q9NQ32 467 aa15.6■□□□□ 0.09
LINC00339-211ENST00000641009 CLEC1BQ9P126 229 aa15.6■□□□□ 0.09
LINC00339-211ENST00000641009 CD207Q9UJ71 328 aa15.6■□□□□ 0.09
LINC00339-211ENST00000641009 TBX3O15119 743 aa15.59■□□□□ 0.09
LINC00339-211ENST00000641009 JAK2O60674 1132 aa15.59■□□□□ 0.09
LINC00339-211ENST00000641009 CDC42EP1Q00587 391 aa15.59■□□□□ 0.09
LINC00339-211ENST00000641009 SMAD4Q13485 552 aaKnown RBP15.59■□□□□ 0.09
LINC00339-211ENST00000641009 CSPP1Q1MSJ5 1256 aa15.59■□□□□ 0.09
LINC00339-211ENST00000641009 TMEM31Q5JXX7 168 aa15.59■□□□□ 0.09
LINC00339-211ENST00000641009 NCAPH2Q6IBW4 605 aa15.59■□□□□ 0.09
LINC00339-211ENST00000641009 KCNT2Q6UVM3 1135 aa15.59■□□□□ 0.09
LINC00339-211ENST00000641009 ZNF598Q86UK7 904 aaKnown RBP15.59■□□□□ 0.09
LINC00339-211ENST00000641009 ADHFE1Q8IWW8 467 aa15.59■□□□□ 0.09
LINC00339-211ENST00000641009 HELQQ8TDG4 1101 aa15.59■□□□□ 0.09
LINC00339-211ENST00000641009 MSLNLQ96KJ4 702 aa15.59■□□□□ 0.09
LINC00339-211ENST00000641009 NAP1L4Q99733 375 aaKnown RBP15.59■□□□□ 0.09
LINC00339-211ENST00000641009 LXNQ9BS40 222 aa15.59■□□□□ 0.09
LINC00339-211ENST00000641009 TLE6Q9H808 572 aa15.59■□□□□ 0.09
LINC00339-211ENST00000641009 BMP2KQ9NSY1 1161 aaPredicted RBP15.59■□□□□ 0.09
LINC00339-211ENST00000641009 DACT1Q9NYF0 836 aa15.59■□□□□ 0.09
LINC00339-211ENST00000641009 RGL1Q9NZL6 768 aa15.59■□□□□ 0.09
LINC00339-211ENST00000641009 PRKAG3Q9UGI9 489 aa15.59■□□□□ 0.09
LINC00339-211ENST00000641009 BARX2Q9UMQ3 279 aaPredicted RBP15.59■□□□□ 0.09
LINC00339-211ENST00000641009 EOMESO95936 686 aa15.59■□□□□ 0.09
LINC00339-211ENST00000641009 SFPQP23246 707 aaKnown RBP eCLIP15.59■□□□□ 0.09
LINC00339-211ENST00000641009 RBM10P98175 930 aaKnown RBP15.59■□□□□ 0.09
LINC00339-211ENST00000641009 CYP4A11Q02928 519 aa15.59■□□□□ 0.09
LINC00339-211ENST00000641009 SPIRE1Q08AE8 756 aa15.59■□□□□ 0.09
LINC00339-211ENST00000641009 EPHA7Q15375 998 aa15.59■□□□□ 0.09
LINC00339-211ENST00000641009 LONRF3Q496Y0 759 aa15.59■□□□□ 0.09
LINC00339-211ENST00000641009 ZNF410Q86VK4 478 aa15.59■□□□□ 0.09
LINC00339-211ENST00000641009 DYDC2Q96IM9 177 aa15.59■□□□□ 0.09
LINC00339-211ENST00000641009 CEP170P1Q96L14 293 aa15.59■□□□□ 0.09
LINC00339-211ENST00000641009 BRMS1Q9HCU9 246 aa15.59■□□□□ 0.09
LINC00339-211ENST00000641009 PIN4Q9Y237 131 aaKnown RBP15.59■□□□□ 0.09
LINC00339-211ENST00000641009 TDRD15B5MCY1 1934 aaKnown RBP15.58■□□□□ 0.08
LINC00339-211ENST00000641009 C19orf67A6NJJ6 358 aa15.58■□□□□ 0.08
LINC00339-211ENST00000641009 FSCN2O14926 492 aa15.58■□□□□ 0.08
LINC00339-211ENST00000641009 DKC1O60832 514 aaKnown RBP eCLIP15.58■□□□□ 0.08
LINC00339-211ENST00000641009 PHKA2P46019 1235 aa15.58■□□□□ 0.08
LINC00339-211ENST00000641009 POLGP54098 1239 aaPredicted RBP15.58■□□□□ 0.08
LINC00339-211ENST00000641009 PLCB3Q01970 1234 aa15.58■□□□□ 0.08
LINC00339-211ENST00000641009 CTTNQ14247 550 aaKnown RBP15.58■□□□□ 0.08
LINC00339-211ENST00000641009 PLPP4Q5VZY2 271 aa15.58■□□□□ 0.08
LINC00339-211ENST00000641009 TWF2Q6IBS0 349 aaKnown RBP15.58■□□□□ 0.08
LINC00339-211ENST00000641009 C4orf19Q8IY42 314 aa15.58■□□□□ 0.08
LINC00339-211ENST00000641009 SLFN12Q8IYM2 578 aa15.58■□□□□ 0.08
LINC00339-211ENST00000641009 SLC7A3Q8WY07 619 aa15.58■□□□□ 0.08
LINC00339-211ENST00000641009 MRPS27Q92552 414 aaKnown RBP15.58■□□□□ 0.08
LINC00339-211ENST00000641009 TMEM143Q96AN5 459 aa15.58■□□□□ 0.08
LINC00339-211ENST00000641009 ZNF558Q96NG5 402 aa15.58■□□□□ 0.08
LINC00339-211ENST00000641009 JPH2Q9BR39 696 aaPredicted RBP15.58■□□□□ 0.08
LINC00339-211ENST00000641009 DHX33Q9H6R0 707 aaKnown RBP15.58■□□□□ 0.08
LINC00339-211ENST00000641009 IFT122Q9HBG6 1241 aa15.58■□□□□ 0.08
LINC00339-211ENST00000641009 CHST12Q9NRB3 414 aa15.58■□□□□ 0.08
LINC00339-211ENST00000641009 COL4A3BPQ9Y5P4 624 aa15.58■□□□□ 0.08
LINC00339-211ENST00000641009 BTBD18B2RXH4 712 aa15.57■□□□□ 0.08
LINC00339-211ENST00000641009 WNT7AO00755 349 aa15.57■□□□□ 0.08
LINC00339-211ENST00000641009 ZBTB39O15060 712 aa15.57■□□□□ 0.08
LINC00339-211ENST00000641009 GPR37L1O60883 481 aa15.57■□□□□ 0.08
LINC00339-211ENST00000641009 BAG4O95429 457 aaKnown RBP15.57■□□□□ 0.08
LINC00339-211ENST00000641009 EYA4O95677 639 aa15.57■□□□□ 0.08
LINC00339-211ENST00000641009 YWHABP31946 246 aaKnown RBP15.57■□□□□ 0.08
LINC00339-211ENST00000641009 ST3GAL1Q11201 340 aa15.57■□□□□ 0.08
LINC00339-211ENST00000641009 DUSP6Q16828 381 aa15.57■□□□□ 0.08
LINC00339-211ENST00000641009 CATSPER4Q7RTX7 472 aa15.57■□□□□ 0.08
LINC00339-211ENST00000641009 DIS3L2Q8IYB7 885 aaKnown RBP15.57■□□□□ 0.08
LINC00339-211ENST00000641009 SMRP1Q8NCR6 262 aa15.57■□□□□ 0.08
LINC00339-211ENST00000641009 VN1R2Q8NFZ6 395 aa15.57■□□□□ 0.08
LINC00339-211ENST00000641009 LPPQ93052 612 aa15.57■□□□□ 0.08
LINC00339-211ENST00000641009 TCF25Q9BQ70 676 aa15.57■□□□□ 0.08
LINC00339-211ENST00000641009 INO80BQ9C086 356 aaPredicted RBP15.57■□□□□ 0.08
LINC00339-211ENST00000641009 ENTPD7Q9NQZ7 604 aa15.57■□□□□ 0.08
LINC00339-211ENST00000641009 LZTS1Q9Y250 596 aa15.57■□□□□ 0.08
LINC00339-211ENST00000641009 MEIS3P2A8K0S8 358 aa15.56■□□□□ 0.08
LINC00339-211ENST00000641009 SRGAP2CP0DJJ0 459 aa15.56■□□□□ 0.08
LINC00339-211ENST00000641009 PPM1AP35813 382 aa15.56■□□□□ 0.08
LINC00339-211ENST00000641009 COASYQ13057 564 aa15.56■□□□□ 0.08
LINC00339-211ENST00000641009 PDE12Q6L8Q7 609 aaKnown RBP15.56■□□□□ 0.08
LINC00339-211ENST00000641009 TPH2Q8IWU9 490 aa15.56■□□□□ 0.08
LINC00339-211ENST00000641009 PRPF31Q8WWY3 499 aaKnown RBP15.56■□□□□ 0.08
LINC00339-211ENST00000641009 PSPC1Q8WXF1 523 aaKnown RBP15.56■□□□□ 0.08
LINC00339-211ENST00000641009 TRAIPQ9BWF2 469 aa15.56■□□□□ 0.08
LINC00339-211ENST00000641009 ZSWIM4Q9H7M6 989 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms