RNA–Protein interactions for RNA: ENST00000640653.1

VEGFA-232, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,170 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-232ENST00000640653 A0A0U1RQF3 1178 aa28.16■■■□□ 2.1
VEGFA-232ENST00000640653 ATP2B1P20020 1258 aa28.16■■■□□ 2.1
VEGFA-232ENST00000640653 GNL2Q13823 731 aaKnown RBP28.16■■■□□ 2.1
VEGFA-232ENST00000640653 CSPP1Q1MSJ5 1256 aa28.16■■■□□ 2.1
VEGFA-232ENST00000640653 KSR1Q8IVT5 923 aa28.16■■■□□ 2.1
VEGFA-232ENST00000640653 FBXO18Q8NFZ0 1043 aa28.16■■■□□ 2.1
VEGFA-232ENST00000640653 PPP2R3CQ969Q6 453 aa28.16■■■□□ 2.1
VEGFA-232ENST00000640653 NECAB3Q96P71 396 aaPredicted RBP28.16■■■□□ 2.1
VEGFA-232ENST00000640653 UPF2Q9HAU5 1272 aaKnown RBP28.16■■■□□ 2.1
VEGFA-232ENST00000640653 TYW1Q9NV66 732 aaKnown RBP28.16■■■□□ 2.1
VEGFA-232ENST00000640653 FNDC1Q4ZHG4 1894 aaPredicted RBP28.15■■■□□ 2.1
VEGFA-232ENST00000640653 CSPG5O95196 566 aa28.15■■■□□ 2.1
VEGFA-232ENST00000640653 LYPLA2O95372 231 aa28.15■■■□□ 2.1
VEGFA-232ENST00000640653 EOMESO95936 686 aa28.15■■■□□ 2.1
VEGFA-232ENST00000640653 MCM7P33993 719 aa28.15■■■□□ 2.1
VEGFA-232ENST00000640653 EMC2Q15006 297 aa28.15■■■□□ 2.1
VEGFA-232ENST00000640653 RNF169Q8NCN4 708 aa28.15■■■□□ 2.1
VEGFA-232ENST00000640653 POF1BQ8WVV4 589 aa28.15■■■□□ 2.1
VEGFA-232ENST00000640653 TMEM143Q96AN5 459 aa28.15■■■□□ 2.1
VEGFA-232ENST00000640653 HSD17B14Q9BPX1 270 aa28.15■■■□□ 2.1
VEGFA-232ENST00000640653 ST18O60284 1047 aa28.14■■■□□ 2.1
VEGFA-232ENST00000640653 LAG3P18627 525 aa28.14■■■□□ 2.1
VEGFA-232ENST00000640653 ORC2Q13416 577 aaPredicted RBP28.14■■■□□ 2.1
VEGFA-232ENST00000640653 COL19A1Q14993 1142 aa28.14■■■□□ 2.1
VEGFA-232ENST00000640653 EP400NLQ6ZTU2 488 aa28.14■■■□□ 2.1
VEGFA-232ENST00000640653 CATSPER4Q7RTX7 472 aa28.14■■■□□ 2.1
VEGFA-232ENST00000640653 LRRC43Q8N309 656 aa28.14■■■□□ 2.1
VEGFA-232ENST00000640653 PRPF31Q8WWY3 499 aaKnown RBP28.14■■■□□ 2.1
VEGFA-232ENST00000640653 CCDC43Q96MW1 224 aaKnown RBP28.14■■■□□ 2.1
VEGFA-232ENST00000640653 CASD1Q96PB1 797 aa28.14■■■□□ 2.1
VEGFA-232ENST00000640653 BMP2KQ9NSY1 1161 aaPredicted RBP28.14■■■□□ 2.1
VEGFA-232ENST00000640653 RNF19AQ9NV58 838 aa28.14■■■□□ 2.1
VEGFA-232ENST00000640653 CLDND1Q9NY35 253 aa28.14■■■□□ 2.1
VEGFA-232ENST00000640653 PIN4Q9Y237 131 aaKnown RBP28.14■■■□□ 2.1
VEGFA-232ENST00000640653 ASAP2O43150 1006 aa28.13■■■□□ 2.09
VEGFA-232ENST00000640653 SKIP12755 728 aa28.13■■■□□ 2.09
VEGFA-232ENST00000640653 UBE3AQ05086 875 aa28.13■■■□□ 2.09
VEGFA-232ENST00000640653 CAMK1Q14012 370 aa28.13■■■□□ 2.09
VEGFA-232ENST00000640653 PUS10Q3MIT2 529 aaKnown RBP28.13■■■□□ 2.09
VEGFA-232ENST00000640653 TWF2Q6IBS0 349 aaKnown RBP28.13■■■□□ 2.09
VEGFA-232ENST00000640653 THNSL1Q8IYQ7 743 aa28.13■■■□□ 2.09
VEGFA-232ENST00000640653 COLGALT1Q8NBJ5 622 aa28.13■■■□□ 2.09
VEGFA-232ENST00000640653 MTRQ99707 1265 aa28.13■■■□□ 2.09
VEGFA-232ENST00000640653 TRAIPQ9BWF2 469 aa28.13■■■□□ 2.09
VEGFA-232ENST00000640653 TMEM60Q9H2L4 133 aa28.13■■■□□ 2.09
VEGFA-232ENST00000640653 CWH43Q9H720 699 aa28.13■■■□□ 2.09
VEGFA-232ENST00000640653 IFT122Q9HBG6 1241 aa28.13■■■□□ 2.09
VEGFA-232ENST00000640653 ANKEF1Q9NU02 776 aa28.13■■■□□ 2.09
VEGFA-232ENST00000640653 TCF20Q9UGU0 1960 aaKnown RBP28.13■■■□□ 2.09
VEGFA-232ENST00000640653 ZBTB39O15060 712 aa28.12■■■□□ 2.09
VEGFA-232ENST00000640653 DNAJB1P25685 340 aa28.12■■■□□ 2.09
VEGFA-232ENST00000640653 LAMTOR4Q0VGL1 99 aa28.12■■■□□ 2.09
VEGFA-232ENST00000640653 HYAL1Q12794 435 aa28.12■■■□□ 2.09
VEGFA-232ENST00000640653 SRGAP1Q7Z6B7 1085 aa28.12■■■□□ 2.09
VEGFA-232ENST00000640653 ZNF598Q86UK7 904 aaKnown RBP28.12■■■□□ 2.09
VEGFA-232ENST00000640653 GADD45GIP1Q8TAE8 222 aaPredicted RBP28.12■■■□□ 2.09
VEGFA-232ENST00000640653 HCSTQ9UBK5 93 aa28.12■■■□□ 2.09
VEGFA-232ENST00000640653 FGF18O76093 207 aa28.11■■■□□ 2.09
VEGFA-232ENST00000640653 SRGAP2CP0DJJ0 459 aa28.11■■■□□ 2.09
VEGFA-232ENST00000640653 PHKA2P46019 1235 aa28.11■■■□□ 2.09
VEGFA-232ENST00000640653 FERMT3Q86UX7 667 aa28.11■■■□□ 2.09
VEGFA-232ENST00000640653 NOSTRINQ8IVI9 506 aa28.11■■■□□ 2.09
VEGFA-232ENST00000640653 RSPH1Q8WYR4 309 aa28.11■■■□□ 2.09
VEGFA-232ENST00000640653 POTEMA6NI47 508 aa28.1■■■□□ 2.09
VEGFA-232ENST00000640653 H3BQ06 376 aaPredicted RBP28.1■■■□□ 2.09
VEGFA-232ENST00000640653 DGAT1O75907 488 aa28.1■■■□□ 2.09
VEGFA-232ENST00000640653 ATF7P17544 494 aaPredicted RBP28.1■■■□□ 2.09
VEGFA-232ENST00000640653 RAB27AP51159 221 aa28.1■■■□□ 2.09
VEGFA-232ENST00000640653 CLLU1OSQ5K130 101 aa28.1■■■□□ 2.09
VEGFA-232ENST00000640653 PTCRAQ6ISU1 281 aaPredicted RBP28.1■■■□□ 2.09
VEGFA-232ENST00000640653 MRPL9Q9BYD2 267 aaKnown RBP28.1■■■□□ 2.09
VEGFA-232ENST00000640653 IGFLR1Q9H665 355 aa28.1■■■□□ 2.09
VEGFA-232ENST00000640653 NOL7Q9UMY1 257 aaKnown RBP28.1■■■□□ 2.09
VEGFA-232ENST00000640653 KIF3AQ9Y496 699 aa28.1■■■□□ 2.09
VEGFA-232ENST00000640653 TRAPPC10P48553 1259 aa28.09■■■□□ 2.09
VEGFA-232ENST00000640653 MXD4Q14582 209 aaPredicted RBP28.09■■■□□ 2.09
VEGFA-232ENST00000640653 ZNF174Q15697 407 aa28.09■■■□□ 2.09
VEGFA-232ENST00000640653 CTC1Q2NKJ3 1217 aa28.09■■■□□ 2.09
VEGFA-232ENST00000640653 TTC38Q5R3I4 469 aa28.09■■■□□ 2.09
VEGFA-232ENST00000640653 LRRC55Q6ZSA7 311 aa28.09■■■□□ 2.09
VEGFA-232ENST00000640653 HELQQ8TDG4 1101 aa28.09■■■□□ 2.09
VEGFA-232ENST00000640653 AGPAT5Q9NUQ2 364 aa28.09■■■□□ 2.09
VEGFA-232ENST00000640653 FAM50BQ9Y247 325 aa28.09■■■□□ 2.09
VEGFA-232ENST00000640653 ATG2AQ2TAZ0 1938 aa28.09■■■□□ 2.09
VEGFA-232ENST00000640653 MUC3AQ02505 3323 aa28.08■■■□□ 2.09
VEGFA-232ENST00000640653 OR52Z1P0C646 297 aa28.08■■■□□ 2.09
VEGFA-232ENST00000640653 XRCC6P12956 609 aaKnown RBP eCLIP28.08■■■□□ 2.091e-10■□□□□ 8.4
VEGFA-232ENST00000640653 IRS1P35568 1242 aa28.08■■■□□ 2.09
VEGFA-232ENST00000640653 PPM1AP35813 382 aa28.08■■■□□ 2.09
VEGFA-232ENST00000640653 RNF149Q8NC42 400 aa28.08■■■□□ 2.09
VEGFA-232ENST00000640653 ERMNQ8TAM6 284 aa28.08■■■□□ 2.09
VEGFA-232ENST00000640653 ZNF558Q96NG5 402 aa28.08■■■□□ 2.09
VEGFA-232ENST00000640653 TUFT1Q9NNX1 390 aa28.08■■■□□ 2.09
VEGFA-232ENST00000640653 XPNPEP1Q9NQW7 623 aa28.08■■■□□ 2.09
VEGFA-232ENST00000640653 TLR9Q9NR96 1032 aa28.08■■■□□ 2.09
VEGFA-232ENST00000640653 FAM105AQ9NUU6 356 aa28.08■■■□□ 2.09
VEGFA-232ENST00000640653 ARID2Q68CP9 1835 aa28.08■■■□□ 2.09
VEGFA-232ENST00000640653 GRXCR2A6NFK2 248 aa28.07■■■□□ 2.08
VEGFA-232ENST00000640653 TECP42680 631 aa28.07■■■□□ 2.08
VEGFA-232ENST00000640653 RARRES1P49788 294 aa28.07■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms