RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 SAMD15Q9P1V8 674 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 POLLQ9UGP5 575 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 PCDHB11Q9Y5F2 797 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 TUBB4AP04350 444 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 GHRP10912 638 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 VCLP18206 1134 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 PTK2BQ14289 1009 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 NFE2Q16621 373 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 PPP1R18Q6NYC8 613 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 ZNF557Q8N988 423 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 CCNYQ8ND76 341 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 IL17RAQ96F46 866 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 DDX27Q96GQ7 796 aaKnown RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 DSEQ9UL01 958 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 A8MXQ7 604 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 NTSR2O95665 410 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 CTSEP14091 401 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 MFAP3P55082 362 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 TPD52P55327 224 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 COG7P83436 770 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 CLUL1Q15846 466 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 DUOXA2Q1HG44 320 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 TTC31Q49AM3 519 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 PABPC1LQ4VXU2 614 aaKnown RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 SDCCAG8Q86SQ7 713 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 RBM23Q86U06 439 aaKnown RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 SAMD3Q8N6K7 520 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 FBF1Q8TES7 1133 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 GJA10Q969M2 543 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 PAWRQ96IZ0 340 aaKnown RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 OXCT2Q9BYC2 517 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 KCNJ14Q9UNX9 436 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 ELP1O95163 1332 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 LRRIQ1Q96JM4 1722 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 SNAP23O00161 211 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 CUTAO60888 179 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 PGK1P00558 417 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 TRAPPC10P48553 1259 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 NPY2RP49146 381 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 UBASH3AP57075 661 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 FAM26FQ5R3K3 315 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 USP38Q8NB14 1042 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 IFT43Q96FT9 208 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 TRIM56Q9BRZ2 755 aaKnown RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 NFKBIZQ9BYH8 718 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 CIPCQ9C0C6 399 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 DCP1AQ9NPI6 582 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 CASQ2O14958 399 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 CXCL14O95715 111 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 THP07101 528 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 IRF1P10914 325 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 PTGS1P23219 599 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 CHMLP26374 656 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 RFC5P40937 340 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 PSEN2P49810 448 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 PDIA6Q15084 440 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 UBE2SQ16763 222 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 SGO2Q562F6 1265 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 CCDC183Q5T5S1 534 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 MAP3K21Q5TCX8 1036 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 DNERQ8NFT8 737 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 NEDD1Q8NHV4 660 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 SPATA18Q8TC71 538 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 ZNF653Q96CK0 615 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 DNAJC7Q99615 494 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 CERS4Q9HA82 394 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 OLA1Q9NTK5 396 aaKnown RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 ABI2Q9NYB9 513 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 GGT7Q9UJ14 662 aa5.39□□□□□ -1.55
SCN1A-218ENST00000640036 LUC7L2Q9Y383 392 aaKnown RBP5.39□□□□□ -1.55
SCN1A-218ENST00000640036 IGSF9BQ9UPX0 1349 aa5.38□□□□□ -1.55
SCN1A-218ENST00000640036 TBC1D3BA6NDS4 549 aa5.38□□□□□ -1.55
SCN1A-218ENST00000640036 ATP5DP30049 168 aa5.38□□□□□ -1.55
SCN1A-218ENST00000640036 FKBP1AP62942 108 aaKnown RBP5.38□□□□□ -1.55
SCN1A-218ENST00000640036 QRICH1Q2TAL8 776 aa5.38□□□□□ -1.55
SCN1A-218ENST00000640036 CEP55Q53EZ4 464 aa5.38□□□□□ -1.55
SCN1A-218ENST00000640036 SYCP2LQ5T4T6 812 aa5.38□□□□□ -1.55
SCN1A-218ENST00000640036 OR6B2Q6IFH4 312 aa5.38□□□□□ -1.55
SCN1A-218ENST00000640036 TRPM4Q8TD43 1214 aa5.38□□□□□ -1.55
SCN1A-218ENST00000640036 PPP4R1Q8TF05 950 aa5.38□□□□□ -1.55
SCN1A-218ENST00000640036 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.38□□□□□ -1.55
SCN1A-218ENST00000640036 TSSK1BQ9BXA7 367 aa5.38□□□□□ -1.55
SCN1A-218ENST00000640036 CTTNBP2NLQ9P2B4 639 aa5.38□□□□□ -1.55
SCN1A-218ENST00000640036 SRRDQ9UH36 339 aa5.38□□□□□ -1.55
SCN1A-218ENST00000640036 IRF6O14896 467 aa5.38□□□□□ -1.55
SCN1A-218ENST00000640036 MAGEC1O60732 1142 aa5.38□□□□□ -1.55
SCN1A-218ENST00000640036 NPM3O75607 178 aaKnown RBP5.38□□□□□ -1.55
SCN1A-218ENST00000640036 RALBP11234 206 aa5.38□□□□□ -1.55
SCN1A-218ENST00000640036 NSFP46459 744 aaKnown RBP5.38□□□□□ -1.55
SCN1A-218ENST00000640036 SGCGQ13326 291 aa5.38□□□□□ -1.55
SCN1A-218ENST00000640036 CEP120Q8N960 986 aa5.38□□□□□ -1.55
SCN1A-218ENST00000640036 ZSCAN1Q8NBB4 408 aa5.38□□□□□ -1.55
SCN1A-218ENST00000640036 PGBD1Q96JS3 809 aa5.38□□□□□ -1.55
SCN1A-218ENST00000640036 TMEM47Q9BQJ4 181 aa5.38□□□□□ -1.55
SCN1A-218ENST00000640036 CUEDC2Q9H467 287 aa5.38□□□□□ -1.55
SCN1A-218ENST00000640036 ICE1Q9Y2F5 2266 aa5.38□□□□□ -1.55
SCN1A-218ENST00000640036 LZTS3O60299 673 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-218ENST00000640036 AKR1B1P15121 316 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms