RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 ZNF571Q7Z3V5 609 aaPredicted RBP17.07■□□□□ 0.32
CLN3-251ENST00000636853 CCDC60Q8IWA6 550 aaPredicted RBP17.07■□□□□ 0.32
CLN3-251ENST00000636853 CHST13Q8NET6 341 aa17.07■□□□□ 0.32
CLN3-251ENST00000636853 CDHR1Q96JP9 859 aa17.07■□□□□ 0.32
CLN3-251ENST00000636853 ARGLU1Q9NWB6 273 aaPredicted RBP17.07■□□□□ 0.32
CLN3-251ENST00000636853 ZNF185O15231 689 aa17.07■□□□□ 0.32
CLN3-251ENST00000636853 NCKAP1LP55160 1127 aa17.07■□□□□ 0.32
CLN3-251ENST00000636853 JAM2P57087 298 aa17.07■□□□□ 0.32
CLN3-251ENST00000636853 DLG4P78352 724 aa17.07■□□□□ 0.32
CLN3-251ENST00000636853 PPP2R5AQ15172 486 aa17.07■□□□□ 0.32
CLN3-251ENST00000636853 C9orf131Q5VYM1 1079 aa17.07■□□□□ 0.32
CLN3-251ENST00000636853 OTUD6AQ7L8S5 288 aa17.07■□□□□ 0.32
CLN3-251ENST00000636853 KRT222Q8N1A0 295 aa17.07■□□□□ 0.32
CLN3-251ENST00000636853 ATP6V0A1Q93050 837 aa17.07■□□□□ 0.32
CLN3-251ENST00000636853 LOC285556D6RIA3 1793 aa17.06■□□□□ 0.32
CLN3-251ENST00000636853 PAPPA2Q9BXP8 1791 aa17.06■□□□□ 0.32
CLN3-251ENST00000636853 NFASCO94856 1347 aa17.06■□□□□ 0.32
CLN3-251ENST00000636853 ANO9A1A5B4 782 aa17.06■□□□□ 0.32
CLN3-251ENST00000636853 STAM2O75886 525 aa17.06■□□□□ 0.32
CLN3-251ENST00000636853 NPTX2P47972 431 aa17.06■□□□□ 0.32
CLN3-251ENST00000636853 IREB2P48200 963 aaKnown RBP17.06■□□□□ 0.32
CLN3-251ENST00000636853 STXBP2Q15833 593 aa17.06■□□□□ 0.32
CLN3-251ENST00000636853 NOA1Q8NC60 698 aaKnown RBP17.06■□□□□ 0.32
CLN3-251ENST00000636853 BSNDQ8WZ55 320 aa17.06■□□□□ 0.32
CLN3-251ENST00000636853 PACSIN1Q9BY11 444 aa17.06■□□□□ 0.32
CLN3-251ENST00000636853 SEPT9Q9UHD8 586 aaPredicted RBP17.06■□□□□ 0.32
CLN3-251ENST00000636853 FBXL5Q9UKA1 691 aa17.06■□□□□ 0.32
CLN3-251ENST00000636853 NAP1L1P55209 391 aaKnown RBP17.05■□□□□ 0.32
CLN3-251ENST00000636853 MYL7Q01449 175 aa17.05■□□□□ 0.32
CLN3-251ENST00000636853 MYBPC2Q14324 1141 aa17.05■□□□□ 0.32
CLN3-251ENST00000636853 ABHD15Q6UXT9 468 aa17.05■□□□□ 0.32
CLN3-251ENST00000636853 SEPT14Q6ZU15 432 aa17.05■□□□□ 0.32
CLN3-251ENST00000636853 ZNF771Q7L3S4 317 aaPredicted RBP17.05■□□□□ 0.32
CLN3-251ENST00000636853 CYFIP1Q7L576 1253 aa17.05■□□□□ 0.32
CLN3-251ENST00000636853 IWS1Q96ST2 819 aa17.05■□□□□ 0.32
CLN3-251ENST00000636853 MMS19Q96T76 1030 aa17.05■□□□□ 0.32
CLN3-251ENST00000636853 SYT17Q9BSW7 474 aa17.05■□□□□ 0.32
CLN3-251ENST00000636853 PAGR1Q9BTK6 254 aa17.05■□□□□ 0.32
CLN3-251ENST00000636853 ST6GALNAC4Q9H4F1 302 aa17.05■□□□□ 0.32
CLN3-251ENST00000636853 ANKZF1Q9H8Y5 726 aa17.05■□□□□ 0.32
CLN3-251ENST00000636853 HSPBP1Q9NZL4 362 aa17.05■□□□□ 0.32
CLN3-251ENST00000636853 JRKLQ9Y4A0 524 aa17.05■□□□□ 0.32
CLN3-251ENST00000636853 SEC31AO94979 1220 aaKnown RBP17.05■□□□□ 0.32
CLN3-251ENST00000636853 RHOXF2BP0C7M4 288 aa17.05■□□□□ 0.32
CLN3-251ENST00000636853 KRT13P13646 458 aa17.05■□□□□ 0.32
CLN3-251ENST00000636853 PRKCEQ02156 737 aa17.05■□□□□ 0.32
CLN3-251ENST00000636853 NCAPG2Q86XI2 1143 aa17.05■□□□□ 0.32
CLN3-251ENST00000636853 DNAAF5Q86Y56 855 aa17.05■□□□□ 0.32
CLN3-251ENST00000636853 TMEM161BQ8NDZ6 487 aa17.05■□□□□ 0.32
CLN3-251ENST00000636853 DNERQ8NFT8 737 aa17.05■□□□□ 0.32
CLN3-251ENST00000636853 RHOXF2Q9BQY4 288 aa17.05■□□□□ 0.32
CLN3-251ENST00000636853 R3HDMLQ9H3Y0 253 aa17.05■□□□□ 0.32
CLN3-251ENST00000636853 ARID2Q68CP9 1835 aa17.05■□□□□ 0.32
CLN3-251ENST00000636853 MYH9P35579 1960 aaKnown RBP17.04■□□□□ 0.32
CLN3-251ENST00000636853 GOLGA8IPA6NC78 632 aa17.04■□□□□ 0.32
CLN3-251ENST00000636853 GOLGA8JA6NMD2 632 aa17.04■□□□□ 0.32
CLN3-251ENST00000636853 TULP1O00294 542 aaPredicted RBP17.04■□□□□ 0.32
CLN3-251ENST00000636853 GFPT2O94808 682 aa17.04■□□□□ 0.32
CLN3-251ENST00000636853 ALDH5A1P51649 535 aaPredicted RBP17.04■□□□□ 0.32
CLN3-251ENST00000636853 DMP1Q13316 513 aaPredicted RBP17.04■□□□□ 0.32
CLN3-251ENST00000636853 TTLL12Q14166 644 aaPredicted RBP17.04■□□□□ 0.32
CLN3-251ENST00000636853 KIAA0753Q2KHM9 967 aa17.04■□□□□ 0.32
CLN3-251ENST00000636853 TMCO3Q6UWJ1 677 aa17.04■□□□□ 0.32
CLN3-251ENST00000636853 RIOX2Q8IUF8 465 aa17.04■□□□□ 0.32
CLN3-251ENST00000636853 XXYLT1Q8NBI6 393 aa17.04■□□□□ 0.32
CLN3-251ENST00000636853 ZNF526Q8TF50 670 aaPredicted RBP17.04■□□□□ 0.32
CLN3-251ENST00000636853 ALS2CR12Q96Q35 445 aa17.04■□□□□ 0.32
CLN3-251ENST00000636853 SPATC1LQ9H0A9 340 aa17.04■□□□□ 0.32
CLN3-251ENST00000636853 INTS2Q9H0H0 1204 aaKnown RBP17.04■□□□□ 0.32
CLN3-251ENST00000636853 LUC7LQ9NQ29 371 aaKnown RBP17.04■□□□□ 0.32
CLN3-251ENST00000636853 KMT5AQ9NQR1 393 aa17.04■□□□□ 0.32
CLN3-251ENST00000636853 DNAJC12Q9UKB3 198 aa17.04■□□□□ 0.32
CLN3-251ENST00000636853 TBX20Q9UMR3 447 aa17.04■□□□□ 0.32
CLN3-251ENST00000636853 A0A0G2JLL6 359 aaPredicted RBP17.04■□□□□ 0.32
CLN3-251ENST00000636853 ANKRD63C9JTQ0 380 aa17.04■□□□□ 0.32
CLN3-251ENST00000636853 EIF3JO75822 258 aaKnown RBP17.04■□□□□ 0.32
CLN3-251ENST00000636853 KLRC1P26715 233 aa17.04■□□□□ 0.32
CLN3-251ENST00000636853 VAMP7P51809 220 aa17.04■□□□□ 0.32
CLN3-251ENST00000636853 SMTNP53814 917 aa17.04■□□□□ 0.32
CLN3-251ENST00000636853 IRX3P78415 501 aaPredicted RBP17.04■□□□□ 0.32
CLN3-251ENST00000636853 TERF2Q15554 542 aa17.04■□□□□ 0.32
CLN3-251ENST00000636853 MIS18BP1Q6P0N0 1132 aa17.04■□□□□ 0.32
CLN3-251ENST00000636853 PRRT2Q7Z6L0 340 aaPredicted RBP17.04■□□□□ 0.32
CLN3-251ENST00000636853 C12orf56Q8IXR9 622 aa17.04■□□□□ 0.32
CLN3-251ENST00000636853 TXLNBQ8N3L3 684 aa17.04■□□□□ 0.32
CLN3-251ENST00000636853 CDCA5Q96FF9 252 aa17.04■□□□□ 0.32
CLN3-251ENST00000636853 NOX5Q96PH1 765 aa17.04■□□□□ 0.32
CLN3-251ENST00000636853 BZW2Q9Y6E2 419 aaKnown RBP17.04■□□□□ 0.32
CLN3-251ENST00000636853 PFASO15067 1338 aa17.04■□□□□ 0.32
CLN3-251ENST00000636853 EMSYQ7Z589 1322 aa17.04■□□□□ 0.32
CLN3-251ENST00000636853 CCDC66A2RUB6 948 aa17.03■□□□□ 0.32
CLN3-251ENST00000636853 DENND3A2RUS2 1198 aa17.03■□□□□ 0.32
CLN3-251ENST00000636853 DKC1O60832 514 aaKnown RBP eCLIP17.03■□□□□ 0.32
CLN3-251ENST00000636853 SUPT20HL2P0C7V6 817 aa17.03■□□□□ 0.32
CLN3-251ENST00000636853 PRKCIP41743 596 aa17.03■□□□□ 0.32
CLN3-251ENST00000636853 PPATQ06203 517 aa17.03■□□□□ 0.32
CLN3-251ENST00000636853 PPP3CAQ08209 521 aa17.03■□□□□ 0.32
CLN3-251ENST00000636853 INTS8Q75QN2 995 aaKnown RBP17.03■□□□□ 0.32
CLN3-251ENST00000636853 PNKPQ96T60 521 aa17.03■□□□□ 0.32
CLN3-251ENST00000636853 SNX12Q9UMY4 172 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms