RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 PPP1R37O75864 691 aa15.58■□□□□ 0.08
CLN3-242ENST00000635958 MYL3P08590 195 aa15.58■□□□□ 0.08
CLN3-242ENST00000635958 CCNE1P24864 410 aa15.58■□□□□ 0.08
CLN3-242ENST00000635958 PSEN2P49810 448 aa15.58■□□□□ 0.08
CLN3-242ENST00000635958 CASP5P51878 434 aa15.58■□□□□ 0.08
CLN3-242ENST00000635958 LRRC41Q15345 812 aa15.58■□□□□ 0.08
CLN3-242ENST00000635958 KIAA0753Q2KHM9 967 aa15.58■□□□□ 0.08
CLN3-242ENST00000635958 IER5Q5VY09 327 aa15.58■□□□□ 0.08
CLN3-242ENST00000635958 AOPEPQ8N6M6 819 aa15.58■□□□□ 0.08
CLN3-242ENST00000635958 NELFBQ8WX92 580 aa15.58■□□□□ 0.08
CLN3-242ENST00000635958 C22orf31O95567 290 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 NCKAP1LP55160 1127 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 SOX10P56693 466 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 TPM4P67936 248 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 MKRN4PQ13434 485 aaPredicted RBP15.57■□□□□ 0.08
CLN3-242ENST00000635958 ALCAMQ13740 583 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 MFSD10Q14728 455 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 SPATA1Q5VX52 437 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 KLHL10Q6JEL2 608 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 LINC01465Q8N7H1 131 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 TCP11Q8WWU5 503 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 MTG1Q9BT17 334 aaPredicted RBP15.57■□□□□ 0.08
CLN3-242ENST00000635958 CGNQ9P2M7 1197 aaKnown RBP15.57■□□□□ 0.08
CLN3-242ENST00000635958 PCDHB13Q9Y5F0 798 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 NRCAMQ92823 1304 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 NRDCO43847 1150 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 MYBP10242 640 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 TNNT1P13805 278 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 SCP2P22307 547 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 KLRC1P26715 233 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 NMT1P30419 496 aaKnown RBP15.57■□□□□ 0.08
CLN3-242ENST00000635958 NPTX2P47972 431 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 SMTNP53814 917 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 PEX3P56589 373 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 ADAM17P78536 824 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 GTF2BQ00403 316 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 PPFIA1Q13136 1202 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 GRIK4Q16099 956 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 MARCH8Q5T0T0 291 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 STXBP4Q6ZWJ1 553 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 PCSK9Q8NBP7 692 aaKnown RBP15.57■□□□□ 0.08
CLN3-242ENST00000635958 TRAPPC12Q8WVT3 735 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 BSNDQ8WZ55 320 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 P2RX5Q93086 422 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 TMEM143Q96AN5 459 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 POLR3FQ9H1D9 316 aaPredicted RBP15.57■□□□□ 0.08
CLN3-242ENST00000635958 HSD3B7Q9H2F3 369 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 SEMA6BQ9H3T3 888 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 CTNND2Q9UQB3 1225 aa15.57■□□□□ 0.08
CLN3-242ENST00000635958 UBE4BO95155 1302 aa15.56■□□□□ 0.08
CLN3-242ENST00000635958 KAT6AQ92794 2004 aa15.56■□□□□ 0.08
CLN3-242ENST00000635958 SCN10AQ9Y5Y9 1956 aa15.56■□□□□ 0.08
CLN3-242ENST00000635958 BICDL2A1A5D9 508 aa15.56■□□□□ 0.08
CLN3-242ENST00000635958 SMIM10L2AP0DMW4 78 aa15.56■□□□□ 0.08
CLN3-242ENST00000635958 SMIM10L2BP0DMW5 78 aa15.56■□□□□ 0.08
CLN3-242ENST00000635958 GLRA2P23416 452 aa15.56■□□□□ 0.08
CLN3-242ENST00000635958 HOXC8P31273 242 aa15.56■□□□□ 0.08
CLN3-242ENST00000635958 HOXD13P35453 343 aa15.56■□□□□ 0.08
CLN3-242ENST00000635958 KCNJ6P48051 423 aa15.56■□□□□ 0.08
CLN3-242ENST00000635958 DMP1Q13316 513 aaPredicted RBP15.56■□□□□ 0.08
CLN3-242ENST00000635958 KCNA10Q16322 511 aa15.56■□□□□ 0.08
CLN3-242ENST00000635958 TPD52L1Q16890 204 aaPredicted RBP15.56■□□□□ 0.08
CLN3-242ENST00000635958 TTI2Q6NXR4 508 aa15.56■□□□□ 0.08
CLN3-242ENST00000635958 MTHFD1LQ6UB35 978 aa15.56■□□□□ 0.08
CLN3-242ENST00000635958 LRRC8AQ8IWT6 810 aa15.56■□□□□ 0.08
CLN3-242ENST00000635958 C17orf53Q8N3J3 647 aaPredicted RBP15.56■□□□□ 0.08
CLN3-242ENST00000635958 RETREG2Q8NC44 543 aa15.56■□□□□ 0.08
CLN3-242ENST00000635958 CCDC112Q8NEF3 446 aa15.56■□□□□ 0.08
CLN3-242ENST00000635958 SH3TC2Q8TF17 1288 aa15.56■□□□□ 0.08
CLN3-242ENST00000635958 IFT74Q96LB3 600 aa15.56■□□□□ 0.08
CLN3-242ENST00000635958 KCTD10Q9H3F6 313 aa15.56■□□□□ 0.08
CLN3-242ENST00000635958 MBLAC1A4D2B0 266 aaPredicted RBP15.55■□□□□ 0.08
CLN3-242ENST00000635958 GCNT3O95395 438 aa15.55■□□□□ 0.08
CLN3-242ENST00000635958 ABCD1P33897 745 aa15.55■□□□□ 0.08
CLN3-242ENST00000635958 NAMPTP43490 491 aa15.55■□□□□ 0.08
CLN3-242ENST00000635958 PMS1P54277 932 aaKnown RBP15.55■□□□□ 0.08
CLN3-242ENST00000635958 STX17P56962 302 aa15.55■□□□□ 0.08
CLN3-242ENST00000635958 LRRC63Q05C16 580 aa15.55■□□□□ 0.08
CLN3-242ENST00000635958 DRP2Q13474 957 aa15.55■□□□□ 0.08
CLN3-242ENST00000635958 MXD4Q14582 209 aaPredicted RBP15.55■□□□□ 0.08
CLN3-242ENST00000635958 PPP2R5AQ15172 486 aa15.55■□□□□ 0.08
CLN3-242ENST00000635958 KNOP1Q1ED39 458 aaKnown RBP15.55■□□□□ 0.08
CLN3-242ENST00000635958 ZCWPW2Q504Y3 356 aa15.55■□□□□ 0.08
CLN3-242ENST00000635958 ANKRD40Q6AI12 368 aa15.55■□□□□ 0.08
CLN3-242ENST00000635958 EFCAB12Q6NXP0 572 aa15.55■□□□□ 0.08
CLN3-242ENST00000635958 HAUS6Q7Z4H7 955 aa15.55■□□□□ 0.08
CLN3-242ENST00000635958 CTU1Q7Z7A3 348 aaKnown RBP15.55■□□□□ 0.08
CLN3-242ENST00000635958 RNF180Q86T96 592 aa15.55■□□□□ 0.08
CLN3-242ENST00000635958 TMEM161BQ8NDZ6 487 aa15.55■□□□□ 0.08
CLN3-242ENST00000635958 ASAP3Q8TDY4 903 aa15.55■□□□□ 0.08
CLN3-242ENST00000635958 PRPF31Q8WWY3 499 aaKnown RBP15.55■□□□□ 0.08
CLN3-242ENST00000635958 TSEN34Q9BSV6 310 aaKnown RBP15.55■□□□□ 0.08
CLN3-242ENST00000635958 NFE2L3Q9Y4A8 694 aa15.55■□□□□ 0.08
CLN3-242ENST00000635958 H0YCG3 227 aa15.54■□□□□ 0.08
CLN3-242ENST00000635958 ASAP2O43150 1006 aa15.54■□□□□ 0.08
CLN3-242ENST00000635958 CAPN15O75808 1086 aa15.54■□□□□ 0.08
CLN3-242ENST00000635958 PRPF6O94906 941 aaKnown RBP15.54■□□□□ 0.08
CLN3-242ENST00000635958 ASGR1P07306 291 aa15.54■□□□□ 0.08
CLN3-242ENST00000635958 DNM2P50570 870 aa15.54■□□□□ 0.08
CLN3-242ENST00000635958 ZC2HC1CQ53FD0 456 aaPredicted RBP15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms