RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 DDX23Q9BUQ8 820 aaKnown RBP11.02□□□□□ -0.65
VPS39-214ENST00000614932 NMRK1Q9NWW6 199 aa11.02□□□□□ -0.65
VPS39-214ENST00000614932 HYOU1Q9Y4L1 999 aa11.02□□□□□ -0.65
VPS39-214ENST00000614932 MYPNQ86TC9 1320 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 ZSCAN5CA6NGD5 496 aaPredicted RBP11.01□□□□□ -0.65
VPS39-214ENST00000614932 ACTN4O43707 911 aaKnown RBP11.01□□□□□ -0.65
VPS39-214ENST00000614932 PPP6R2O75170 966 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 ETS2P15036 469 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 VHLP40337 213 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 PDE6CP51160 858 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 ZNF827Q17R98 1081 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 TMEM259Q4ZIN3 620 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 FAAH2Q6GMR7 532 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 KANK3Q6NY19 840 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 CATIPQ7Z7H3 387 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 MAPKAPK5Q8IW41 473 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.01□□□□□ -0.65
VPS39-214ENST00000614932 TGFBRAP1Q8WUH2 860 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 LRRC45Q96CN5 670 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 TUBGCP5Q96RT8 1024 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 CRNKL1Q9BZJ0 848 aaKnown RBP11.01□□□□□ -0.65
VPS39-214ENST00000614932 LACRTQ9GZZ8 138 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 RETREG1Q9H6L5 497 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 TBCCD1Q9NVR7 557 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 GGT7Q9UJ14 662 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 TRIM33Q9UPN9 1127 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 SIGLEC16A6NMB1 481 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 RIMBP2O15034 1052 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 DEXIO95424 95 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 PYGMP11217 842 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 RXRBP28702 533 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 CASP1P29466 404 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 SKIV2L2P42285 1042 aaKnown RBP11.01□□□□□ -0.65
VPS39-214ENST00000614932 PMS2P54278 862 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 BCL2A1Q16548 175 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 PARP6Q2NL67 630 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 PRR5LQ6MZQ0 368 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 DDX12PQ92771 950 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 RPGRQ92834 1020 aaKnown RBP11.01□□□□□ -0.65
VPS39-214ENST00000614932 ATP6V0A1Q93050 837 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 ANKRD2Q9GZV1 360 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 CPVLQ9H3G5 476 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 FAM114A2Q9NRY5 505 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 KCNH3Q9ULD8 1083 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 MYH2Q9UKX2 1941 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 COL5A3P25940 1745 aaPredicted RBP11.01□□□□□ -0.65
VPS39-214ENST00000614932 ARAP2Q8WZ64 1704 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 MROH7Q68CQ1 1323 aa11.01□□□□□ -0.65
VPS39-214ENST00000614932 MACROD2A1Z1Q3 448 aa11□□□□□ -0.65
VPS39-214ENST00000614932 USP17L3A6NCW0 530 aa11□□□□□ -0.65
VPS39-214ENST00000614932 USP17L4A6NCW7 530 aa11□□□□□ -0.65
VPS39-214ENST00000614932 DCDC2CA8MYV0 355 aa11□□□□□ -0.65
VPS39-214ENST00000614932 SNX3O60493 162 aa11□□□□□ -0.65
VPS39-214ENST00000614932 TACC1O75410 805 aa11□□□□□ -0.65
VPS39-214ENST00000614932 UFL1O94874 794 aa11□□□□□ -0.65
VPS39-214ENST00000614932 SHBGP04278 402 aa11□□□□□ -0.65
VPS39-214ENST00000614932 MYCLP1P12525 358 aaPredicted RBP11□□□□□ -0.65
VPS39-214ENST00000614932 CCNB1P14635 433 aa11□□□□□ -0.65
VPS39-214ENST00000614932 TSR1Q2NL82 804 aaKnown RBP11□□□□□ -0.65
VPS39-214ENST00000614932 MIGA2Q7L4E1 593 aa11□□□□□ -0.65
VPS39-214ENST00000614932 USP17L1Q7RTZ2 530 aa11□□□□□ -0.65
VPS39-214ENST00000614932 ZC3H18Q86VM9 953 aaKnown RBP11□□□□□ -0.65
VPS39-214ENST00000614932 SPATA24Q86W54 205 aa11□□□□□ -0.65
VPS39-214ENST00000614932 SH3TC2Q8TF17 1288 aa11□□□□□ -0.65
VPS39-214ENST00000614932 NACC2Q96BF6 587 aa11□□□□□ -0.65
VPS39-214ENST00000614932 OLFM3Q96PB7 478 aa11□□□□□ -0.65
VPS39-214ENST00000614932 SH3GL1Q99961 368 aa11□□□□□ -0.65
VPS39-214ENST00000614932 SMARCAL1Q9NZC9 954 aa11□□□□□ -0.65
VPS39-214ENST00000614932 STOML1Q9UBI4 398 aa11□□□□□ -0.65
VPS39-214ENST00000614932 RCCD1A6NED2 376 aa11□□□□□ -0.65
VPS39-214ENST00000614932 BOLA2-SMG1P6H3BVE0 249 aa11□□□□□ -0.65
VPS39-214ENST00000614932 POLR2DO15514 142 aaKnown RBP11□□□□□ -0.65
VPS39-214ENST00000614932 ASMTLO95671 621 aa11□□□□□ -0.65
VPS39-214ENST00000614932 LDHBP07195 334 aaKnown RBP11□□□□□ -0.65
VPS39-214ENST00000614932 NAT2P11245 290 aa11□□□□□ -0.65
VPS39-214ENST00000614932 CYLC1P35663 651 aaPredicted RBP11□□□□□ -0.65
VPS39-214ENST00000614932 HALP42357 657 aa11□□□□□ -0.65
VPS39-214ENST00000614932 UAP1Q16222 522 aaPredicted RBP11□□□□□ -0.65
VPS39-214ENST00000614932 GSTA3Q16772 222 aa11□□□□□ -0.65
VPS39-214ENST00000614932 ZC2HC1CQ53FD0 456 aaPredicted RBP11□□□□□ -0.65
VPS39-214ENST00000614932 PHLDB3Q6NSJ2 640 aa11□□□□□ -0.65
VPS39-214ENST00000614932 POTEEQ6S8J3 1075 aa11□□□□□ -0.65
VPS39-214ENST00000614932 CFAP61Q8NHU2 1237 aa11□□□□□ -0.65
VPS39-214ENST00000614932 USP15Q9Y4E8 981 aaPredicted RBP11□□□□□ -0.65
VPS39-214ENST00000614932 BTAF1O14981 1849 aa11□□□□□ -0.65
VPS39-214ENST00000614932 DOCK2Q92608 1830 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 LMNAP02545 664 aaKnown RBP10.99□□□□□ -0.65
VPS39-214ENST00000614932 CHN1P15882 459 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 TCF7P36402 384 aaPredicted RBP10.99□□□□□ -0.65
VPS39-214ENST00000614932 CDK17Q00537 523 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 TFAP4Q01664 338 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 OCRLQ01968 901 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 CAMK2BQ13554 666 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 ZNF174Q15697 407 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 SH3D19Q5HYK7 790 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 SRBD1Q8N5C6 995 aaKnown RBP10.99□□□□□ -0.65
VPS39-214ENST00000614932 RETREG2Q8NC44 543 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 ANKK1Q8NFD2 765 aa10.99□□□□□ -0.65
VPS39-214ENST00000614932 RBM46Q8TBY0 533 aaKnown RBP10.99□□□□□ -0.65
VPS39-214ENST00000614932 NAT14Q8WUY8 206 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms