RNA–Protein interactions for RNA: ENST00000607187.1

CTSA-215, Transcript of cathepsin A, human

TSL 2

Gene CTSA, Length 509 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTSA-215	ENST00000607187	SP7	Q8TDD2	431 aa	Predicted RBP	11.17	□□□□□ -0.62
CTSA-215	ENST00000607187	PPP1R16B	Q96T49	567 aa		11.17	□□□□□ -0.62
CTSA-215	ENST00000607187	GAS2L1	Q99501	681 aa	Predicted RBP	11.17	□□□□□ -0.62
CTSA-215	ENST00000607187	OSMR	Q99650	979 aa		11.17	□□□□□ -0.62
CTSA-215	ENST00000607187	HSD17B14	Q9BPX1	270 aa		11.17	□□□□□ -0.62
CTSA-215	ENST00000607187	SH2D3A	Q9BRG2	576 aa		11.17	□□□□□ -0.62
CTSA-215	ENST00000607187	ADAMTS10	Q9H324	1103 aa		11.17	□□□□□ -0.62
CTSA-215	ENST00000607187	TMX1	Q9H3N1	280 aa		11.17	□□□□□ -0.62
CTSA-215	ENST00000607187	ZSWIM4	Q9H7M6	989 aa		11.17	□□□□□ -0.62
CTSA-215	ENST00000607187	ERVK-5	Q9HDB9	667 aa		11.17	□□□□□ -0.62
CTSA-215	ENST00000607187	CYP26B1	Q9NR63	512 aa		11.17	□□□□□ -0.62
CTSA-215	ENST00000607187	AKT3	Q9Y243	479 aa		11.17	□□□□□ -0.62
CTSA-215	ENST00000607187	NOC2L	Q9Y3T9	749 aa	Known RBP	11.17	□□□□□ -0.62
CTSA-215	ENST00000607187	PPME1	Q9Y570	386 aa		11.17	□□□□□ -0.62
CTSA-215	ENST00000607187	COL4A4	P53420	1690 aa	Predicted RBP	11.17	□□□□□ -0.62
CTSA-215	ENST00000607187	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	11.17	□□□□□ -0.62
CTSA-215	ENST00000607187	BRWD1	Q9NSI6	2320 aa		11.17	□□□□□ -0.62
CTSA-215	ENST00000607187	MYO7A	Q13402	2215 aa		11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	LINC01553	A4QN01	128 aa		11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	EPOP	A6NHQ4	379 aa		11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	GPR182	O15218	404 aa		11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	YWHAB	P31946	246 aa	Known RBP	11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	TOB1	P50616	345 aa	Predicted RBP	11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	GPC3	P51654	580 aa		11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	NPEPPS	P55786	919 aa		11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	CDC42EP1	Q00587	391 aa		11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	CYP4A11	Q02928	519 aa		11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	NFX1	Q12986	1120 aa	Known RBP	11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	DRP2	Q13474	957 aa		11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	CTTN	Q14247	550 aa	Known RBP	11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	TTC38	Q5R3I4	469 aa		11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	ODR4	Q5SWX8	454 aa		11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	FOXD4L5	Q5VV16	416 aa	Predicted RBP	11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	PLA2G4F	Q68DD2	849 aa		11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	SPRED2	Q7Z698	418 aa		11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	FAM228A	Q86W67	206 aa		11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	TPH2	Q8IWU9	490 aa		11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	CRIPAK	Q8N1N5	446 aa		11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	NEK9	Q8TD19	979 aa		11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	ARNTL2	Q8WYA1	636 aa		11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	DYDC2	Q96IM9	177 aa		11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	YME1L1	Q96TA2	773 aa		11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	EIF2AK1	Q9BQI3	630 aa	Known RBP	11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	CERS4	Q9HA82	394 aa		11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	ST3GAL5	Q9UNP4	418 aa		11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	11.16	□□□□□ -0.62
CTSA-215	ENST00000607187	KIAA1671	Q9BY89	1806 aa		11.15	□□□□□ -0.62
CTSA-215	ENST00000607187	POTEM	A6NI47	508 aa		11.15	□□□□□ -0.62
CTSA-215	ENST00000607187	ZBTB39	O15060	712 aa		11.15	□□□□□ -0.62
CTSA-215	ENST00000607187	LYPLA2	O95372	231 aa		11.15	□□□□□ -0.62
CTSA-215	ENST00000607187	OR52Z1	P0C646	297 aa		11.15	□□□□□ -0.62
CTSA-215	ENST00000607187	POU3F3	P20264	500 aa	Predicted RBP	11.15	□□□□□ -0.62
CTSA-215	ENST00000607187	RFX1	P22670	979 aa		11.15	□□□□□ -0.62
CTSA-215	ENST00000607187	EIF4B	P23588	611 aa	Known RBP	11.15	□□□□□ -0.62
CTSA-215	ENST00000607187	DNM2	P50570	870 aa		11.15	□□□□□ -0.62
CTSA-215	ENST00000607187	ERVK-21	P61565	698 aa		11.15	□□□□□ -0.62
CTSA-215	ENST00000607187	CUL4A	Q13619	759 aa		11.15	□□□□□ -0.62
CTSA-215	ENST00000607187	OTUD6A	Q7L8S5	288 aa		11.15	□□□□□ -0.62
CTSA-215	ENST00000607187	EXOC8	Q8IYI6	725 aa		11.15	□□□□□ -0.62
CTSA-215	ENST00000607187	C4orf32	Q8N8J7	132 aa		11.15	□□□□□ -0.62
CTSA-215	ENST00000607187	ADAMTS19	Q8TE59	1207 aa		11.15	□□□□□ -0.62
CTSA-215	ENST00000607187	CEP170P1	Q96L14	293 aa		11.15	□□□□□ -0.62
CTSA-215	ENST00000607187	TGS1	Q96RS0	853 aa	Known RBP	11.15	□□□□□ -0.62
CTSA-215	ENST00000607187	JPH2	Q9BR39	696 aa	Predicted RBP	11.15	□□□□□ -0.62
CTSA-215	ENST00000607187	DHX33	Q9H6R0	707 aa	Known RBP	11.15	□□□□□ -0.62
CTSA-215	ENST00000607187	RC3H2	Q9HBD1	1191 aa	Known RBP	11.15	□□□□□ -0.62
CTSA-215	ENST00000607187	NOL7	Q9UMY1	257 aa	Known RBP	11.15	□□□□□ -0.62
CTSA-215	ENST00000607187	SMC3	Q9UQE7	1217 aa		11.15	□□□□□ -0.62
CTSA-215	ENST00000607187	RFXAP	O00287	272 aa		11.14	□□□□□ -0.63
CTSA-215	ENST00000607187	MGEA5	O60502	916 aa		11.14	□□□□□ -0.63
CTSA-215	ENST00000607187	LPXN	O60711	386 aa		11.14	□□□□□ -0.63
CTSA-215	ENST00000607187	DGKI	O75912	1065 aa		11.14	□□□□□ -0.63
CTSA-215	ENST00000607187	DARS	P14868	501 aa	Known RBP	11.14	□□□□□ -0.63
CTSA-215	ENST00000607187	IGFBP4	P22692	258 aa		11.14	□□□□□ -0.63
CTSA-215	ENST00000607187	TEC	P42680	631 aa		11.14	□□□□□ -0.63
CTSA-215	ENST00000607187	NPAS4	Q8IUM7	802 aa		11.14	□□□□□ -0.63
CTSA-215	ENST00000607187	SLC7A3	Q8WY07	619 aa		11.14	□□□□□ -0.63
CTSA-215	ENST00000607187	ZNF689	Q96CS4	500 aa	Predicted RBP	11.14	□□□□□ -0.63
CTSA-215	ENST00000607187	ZNF668	Q96K58	619 aa	Predicted RBP	11.14	□□□□□ -0.63
CTSA-215	ENST00000607187	ADAM2	Q99965	735 aa		11.14	□□□□□ -0.63
CTSA-215	ENST00000607187	RGS18	Q9NS28	235 aa		11.14	□□□□□ -0.63
CTSA-215	ENST00000607187	SUCLA2	Q9P2R7	463 aa	Predicted RBP	11.14	□□□□□ -0.63
CTSA-215	ENST00000607187	CUL9	Q8IWT3	2517 aa		11.13	□□□□□ -0.63
CTSA-215	ENST00000607187	MUC3A	Q02505	3323 aa		11.13	□□□□□ -0.63
CTSA-215	ENST00000607187	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	11.13	□□□□□ -0.63
CTSA-215	ENST00000607187		H3BQV1	296 aa		11.13	□□□□□ -0.63
CTSA-215	ENST00000607187	GAS2	O43903	313 aa	Known RBP	11.13	□□□□□ -0.63
CTSA-215	ENST00000607187	BRD1	O95696	1058 aa		11.13	□□□□□ -0.63
CTSA-215	ENST00000607187	SPATA31C1	P0DKV0	1188 aa		11.13	□□□□□ -0.63
CTSA-215	ENST00000607187	C7	P10643	843 aa		11.13	□□□□□ -0.63
CTSA-215	ENST00000607187	XRCC6	P12956	609 aa	Known RBP eCLIP	11.13	□□□□□ -0.63
CTSA-215	ENST00000607187	SARS	P49591	514 aa	Known RBP	11.13	□□□□□ -0.63
CTSA-215	ENST00000607187	POLG	P54098	1239 aa	Predicted RBP	11.13	□□□□□ -0.63
CTSA-215	ENST00000607187	KCNA1	Q09470	495 aa		11.13	□□□□□ -0.63
CTSA-215	ENST00000607187	DSC3	Q14574	896 aa		11.13	□□□□□ -0.63
CTSA-215	ENST00000607187	XKR9	Q5GH70	373 aa		11.13	□□□□□ -0.63
CTSA-215	ENST00000607187	LARP1B	Q659C4	914 aa	Known RBP	11.13	□□□□□ -0.63
CTSA-215	ENST00000607187	MCTP1	Q6DN14	999 aa		11.13	□□□□□ -0.63
CTSA-215	ENST00000607187	SLC24A5	Q71RS6	500 aa		11.13	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms