RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 EOMESO95936 686 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 P4HBP07237 508 aaKnown RBP10.98□□□□□ -0.65
VRK3-216ENST00000599342 SKIP12755 728 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 KRT2P35908 639 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 POLGP54098 1239 aaPredicted RBP10.98□□□□□ -0.65
VRK3-216ENST00000599342 PLCB3Q01970 1234 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 KRT17Q04695 432 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 PLPP4Q5VZY2 271 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 PLA2G4FQ68DD2 849 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 TWF2Q6IBS0 349 aaKnown RBP10.98□□□□□ -0.65
VRK3-216ENST00000599342 NCAPH2Q6IBW4 605 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 KCNT2Q6UVM3 1135 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 ANO5Q75V66 913 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 POTEDQ86YR6 584 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 EXOC8Q8IYI6 725 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 SLFN12Q8IYM2 578 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 SMRP1Q8NCR6 262 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 OXER1Q8TDS5 423 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 MRPS27Q92552 414 aaKnown RBP10.98□□□□□ -0.65
VRK3-216ENST00000599342 CEP170P1Q96L14 293 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 CEP89Q96ST8 783 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 TCF25Q9BQ70 676 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 FDXACB1Q9BRP7 624 aaPredicted RBP10.98□□□□□ -0.65
VRK3-216ENST00000599342 CYP26B1Q9NR63 512 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 CHST12Q9NRB3 414 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 GJB4Q9NTQ9 266 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 RNF19AQ9NV58 838 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 VAV3Q9UKW4 847 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 BARX2Q9UMQ3 279 aaPredicted RBP10.98□□□□□ -0.65
VRK3-216ENST00000599342 PIN4Q9Y237 131 aaKnown RBP10.98□□□□□ -0.65
VRK3-216ENST00000599342 PPME1Q9Y570 386 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 PCDHGC5Q9Y5F6 944 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 PLXNA4Q9HCM2 1894 aa10.98□□□□□ -0.65
VRK3-216ENST00000599342 WDR81Q562E7 1941 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 C19orf67A6NJJ6 358 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 PRR33A8MZF0 331 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 PER2O15055 1255 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 CTDNEP1O95476 244 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 EYA4O95677 639 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 GLP2RO95838 553 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 PBX3P40426 434 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 COASYQ13057 564 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 TRIM29Q14134 588 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 BMS1Q14692 1282 aaKnown RBP10.97□□□□□ -0.65
VRK3-216ENST00000599342 EPHA7Q15375 998 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 DUSP6Q16828 381 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 CLLU1OSQ5K130 101 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 ERICH6BQ5W0A0 696 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 LRRC55Q6ZSA7 311 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 OTUD6AQ7L8S5 288 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 CATSPER4Q7RTX7 472 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 NECAB1Q8N987 351 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 HELQQ8TDG4 1101 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 RSPH1Q8WYR4 309 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 GTF3C6Q969F1 213 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 FAM122AQ96E09 287 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 MSLNLQ96KJ4 702 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 LXNQ9BS40 222 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 NGRNQ9NPE2 291 aaKnown RBP10.97□□□□□ -0.65
VRK3-216ENST00000599342 C11orf16Q9NQ32 467 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 SPG21Q9NZD8 308 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 CLEC1BQ9P126 229 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 COL4A3BPQ9Y5P4 624 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 BRWD1Q9NSI6 2320 aa10.97□□□□□ -0.65
VRK3-216ENST00000599342 FSCN2O14926 492 aa10.96□□□□□ -0.65
VRK3-216ENST00000599342 GAS2O43903 313 aaKnown RBP10.96□□□□□ -0.65
VRK3-216ENST00000599342 DTNBO60941 627 aa10.96□□□□□ -0.65
VRK3-216ENST00000599342 ATF7P17544 494 aaPredicted RBP10.96□□□□□ -0.65
VRK3-216ENST00000599342 YWHABP31946 246 aaKnown RBP10.96□□□□□ -0.65
VRK3-216ENST00000599342 CA8P35219 290 aa10.96□□□□□ -0.65
VRK3-216ENST00000599342 PLA2G5P39877 138 aa10.96□□□□□ -0.65
VRK3-216ENST00000599342 RFC5P40937 340 aa10.96□□□□□ -0.65
VRK3-216ENST00000599342 PHKA2P46019 1235 aa10.96□□□□□ -0.65
VRK3-216ENST00000599342 ALDH7A1P49419 539 aaKnown RBP10.96□□□□□ -0.65
VRK3-216ENST00000599342 RAB27AP51159 221 aa10.96□□□□□ -0.65
VRK3-216ENST00000599342 NPEPPSP55786 919 aa10.96□□□□□ -0.65
VRK3-216ENST00000599342 ERVFC1P60507 584 aa10.96□□□□□ -0.65
VRK3-216ENST00000599342 NR5A1Q13285 461 aa10.96□□□□□ -0.65
VRK3-216ENST00000599342 ME3Q16798 604 aa10.96□□□□□ -0.65
VRK3-216ENST00000599342 TMC7Q7Z402 723 aa10.96□□□□□ -0.65
VRK3-216ENST00000599342 ZNF598Q86UK7 904 aaKnown RBP10.96□□□□□ -0.65
VRK3-216ENST00000599342 KSR1Q8IVT5 923 aa10.96□□□□□ -0.65
VRK3-216ENST00000599342 C4orf19Q8IY42 314 aa10.96□□□□□ -0.65
VRK3-216ENST00000599342 TCP11Q8WWU5 503 aa10.96□□□□□ -0.65
VRK3-216ENST00000599342 PSPC1Q8WXF1 523 aaKnown RBP10.96□□□□□ -0.65
VRK3-216ENST00000599342 HAS1Q92839 578 aa10.96□□□□□ -0.65
VRK3-216ENST00000599342 TRAIPQ9BWF2 469 aa10.96□□□□□ -0.65
VRK3-216ENST00000599342 FAM105AQ9NUU6 356 aa10.96□□□□□ -0.65
VRK3-216ENST00000599342 CARNS1A5YM72 827 aa10.95□□□□□ -0.66
VRK3-216ENST00000599342 ZC3H11AO75152 810 aaKnown RBP eCLIP10.95□□□□□ -0.66
VRK3-216ENST00000599342 LARGE1O95461 756 aa10.95□□□□□ -0.66
VRK3-216ENST00000599342 NEK4P51957 841 aa10.95□□□□□ -0.66
VRK3-216ENST00000599342 CYP4A11Q02928 519 aa10.95□□□□□ -0.66
VRK3-216ENST00000599342 RNASELQ05823 741 aaKnown RBP10.95□□□□□ -0.66
VRK3-216ENST00000599342 CTTNQ14247 550 aaKnown RBP10.95□□□□□ -0.66
VRK3-216ENST00000599342 SMC1AQ14683 1233 aaKnown RBP10.95□□□□□ -0.66
VRK3-216ENST00000599342 EMC2Q15006 297 aa10.95□□□□□ -0.66
VRK3-216ENST00000599342 CALCRLQ16602 461 aa10.95□□□□□ -0.66
VRK3-216ENST00000599342 XKR9Q5GH70 373 aa10.95□□□□□ -0.66
VRK3-216ENST00000599342 EARS2Q5JPH6 523 aaKnown RBP10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms