RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 EXOC8Q8IYI6 725 aa11.73□□□□□ -0.53
LIG1-210ENST00000596332 MCPH1Q8NEM0 835 aa11.73□□□□□ -0.53
LIG1-210ENST00000596332 DBF4BQ8NFT6 615 aa11.73□□□□□ -0.53
LIG1-210ENST00000596332 LINC01599Q8WXQ3 324 aa11.73□□□□□ -0.53
LIG1-210ENST00000596332 MRPS27Q92552 414 aaKnown RBP11.73□□□□□ -0.53
LIG1-210ENST00000596332 DDX12PQ92771 950 aa11.73□□□□□ -0.53
LIG1-210ENST00000596332 KCNN1Q92952 543 aa11.73□□□□□ -0.53
LIG1-210ENST00000596332 PAGE5Q96GU1 130 aa11.73□□□□□ -0.53
LIG1-210ENST00000596332 CDK5RAP3Q96JB5 506 aa11.73□□□□□ -0.53
LIG1-210ENST00000596332 OSMRQ99650 979 aa11.73□□□□□ -0.53
LIG1-210ENST00000596332 JPH2Q9BR39 696 aaPredicted RBP11.73□□□□□ -0.53
LIG1-210ENST00000596332 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.73□□□□□ -0.532e-6■■□□□ 11.9
LIG1-210ENST00000596332 STRA6Q9BX79 667 aa11.73□□□□□ -0.53
LIG1-210ENST00000596332 FGFBP2Q9BYJ0 223 aa11.73□□□□□ -0.53
LIG1-210ENST00000596332 ERVK-5Q9HDB9 667 aa11.73□□□□□ -0.53
LIG1-210ENST00000596332 IL23AQ9NPF7 189 aa11.73□□□□□ -0.53
LIG1-210ENST00000596332 KCND2Q9NZV8 630 aa11.73□□□□□ -0.53
LIG1-210ENST00000596332 AKT3Q9Y243 479 aa11.73□□□□□ -0.53
LIG1-210ENST00000596332 PDE4DIPQ5VU43 2346 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 TANC1Q9C0D5 1861 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 ASAP2O43150 1006 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 MGEA5O60502 916 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 PRPF40AO75400 957 aaKnown RBP11.72□□□□□ -0.53
LIG1-210ENST00000596332 NR1I2O75469 434 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 SRGAP2CP0DJJ0 459 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 GHRP10912 638 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 FGFR4P22455 802 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 TMOD1P28289 359 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 HOXA11P31270 313 aaPredicted RBP11.72□□□□□ -0.53
LIG1-210ENST00000596332 CD52P31358 61 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 BMP8BP34820 402 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 STAT6P42226 847 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 NPTX2P47972 431 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 FPGSQ05932 587 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 CUL4BQ13620 913 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 FAM102BQ5T8I3 360 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 CDCA2Q69YH5 1023 aaPredicted RBP11.72□□□□□ -0.53
LIG1-210ENST00000596332 KRBA2Q6ZNG9 492 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 ZNF365Q70YC5 407 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 SV2BQ7L1I2 683 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 ZNF410Q86VK4 478 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 IQUBQ8NA54 791 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 TCP11Q8WWU5 503 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 PSPC1Q8WXF1 523 aaKnown RBP11.72□□□□□ -0.53
LIG1-210ENST00000596332 C7orf25Q9BPX7 421 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 NFKBIZQ9BYH8 718 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 TRIM9Q9C026 710 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 CCDC113Q9H0I3 377 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 FAM13BQ9NYF5 915 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 PADI3Q9ULW8 664 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 USP20Q9Y2K6 914 aa11.72□□□□□ -0.53
LIG1-210ENST00000596332 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.71□□□□□ -0.53
LIG1-210ENST00000596332 RPLP2P05387 115 aaKnown RBP11.71□□□□□ -0.53
LIG1-210ENST00000596332 SSBP05455 408 aaKnown RBP eCLIP11.71□□□□□ -0.53
LIG1-210ENST00000596332 PRR29P0C7W0 189 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 RFC2P35250 354 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 SYKP43405 635 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 DNM2P50570 870 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 MBTD1Q05BQ5 628 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 MXD4Q14582 209 aaPredicted RBP11.71□□□□□ -0.53
LIG1-210ENST00000596332 SHHQ15465 462 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 TPRNQ4KMQ1 711 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 TSHZ1Q6ZSZ6 1077 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 DYMQ7RTS9 669 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 DEFB128Q7Z7B8 93 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 RSPH3Q86UC2 560 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 TMEM199Q8N511 208 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 CCDC155Q8N6L0 562 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 RNF149Q8NC42 400 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 GLIS3Q8NEA6 775 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 KIFAP3Q92845 792 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 MAP7D2Q96T17 732 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 KIFC3Q9BVG8 833 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 TIPINQ9BVW5 301 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 TNMDQ9H2S6 317 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 FZD8Q9H461 694 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 CUEDC2Q9H467 287 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 CXXC1Q9P0U4 656 aaPredicted RBP11.71□□□□□ -0.53
LIG1-210ENST00000596332 ARHGAP28Q9P2N2 729 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 ODF2LQ9ULJ1 636 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 ST3GAL5Q9UNP4 418 aa11.71□□□□□ -0.53
LIG1-210ENST00000596332 ENPP3O14638 875 aa11.7□□□□□ -0.54
LIG1-210ENST00000596332 PPP1R37O75864 691 aa11.7□□□□□ -0.54
LIG1-210ENST00000596332 PARNO95453 639 aaKnown RBP11.7□□□□□ -0.54
LIG1-210ENST00000596332 PLS3P13797 630 aa11.7□□□□□ -0.54
LIG1-210ENST00000596332 TXLNAP40222 546 aa11.7□□□□□ -0.54
LIG1-210ENST00000596332 NAMPTP43490 491 aa11.7□□□□□ -0.54
LIG1-210ENST00000596332 NCKAP1LP55160 1127 aa11.7□□□□□ -0.54
LIG1-210ENST00000596332 PEX3P56589 373 aa11.7□□□□□ -0.54
LIG1-210ENST00000596332 CDC42EP1Q00587 391 aa11.7□□□□□ -0.54
LIG1-210ENST00000596332 FAM160A1Q05DH4 1040 aa11.7□□□□□ -0.54
LIG1-210ENST00000596332 PPIGQ13427 754 aaKnown RBP eCLIP11.7□□□□□ -0.542e-9■■□□□ 14.3
LIG1-210ENST00000596332 ZNF710Q8N1W2 664 aa11.7□□□□□ -0.54
LIG1-210ENST00000596332 TMEM161BQ8NDZ6 487 aa11.7□□□□□ -0.54
LIG1-210ENST00000596332 SPIRE2Q8WWL2 714 aa11.7□□□□□ -0.54
LIG1-210ENST00000596332 HPS3Q969F9 1004 aa11.7□□□□□ -0.54
LIG1-210ENST00000596332 NLRP4Q96MN2 994 aa11.7□□□□□ -0.54
LIG1-210ENST00000596332 BLZF1Q9H2G9 400 aa11.7□□□□□ -0.54
LIG1-210ENST00000596332 PRKAG2Q9UGJ0 569 aa11.7□□□□□ -0.54
LIG1-210ENST00000596332 ABLIM1O14639 778 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms