RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 TPM4P67936 248 aa16.24■□□□□ 0.19
SHKBP1-211ENST00000595945 ADAM17P78536 824 aa16.24■□□□□ 0.19
SHKBP1-211ENST00000595945 KCNA1Q09470 495 aa16.24■□□□□ 0.19
SHKBP1-211ENST00000595945 DMP1Q13316 513 aaPredicted RBP16.24■□□□□ 0.19
SHKBP1-211ENST00000595945 PPP2R5AQ15172 486 aa16.24■□□□□ 0.19
SHKBP1-211ENST00000595945 GNASQ5JWF2 1037 aa16.24■□□□□ 0.19
SHKBP1-211ENST00000595945 LHX8Q68G74 356 aa16.24■□□□□ 0.19
SHKBP1-211ENST00000595945 HAUS6Q7Z4H7 955 aa16.24■□□□□ 0.19
SHKBP1-211ENST00000595945 IRF2BP1Q8IU81 584 aa16.24■□□□□ 0.19
SHKBP1-211ENST00000595945 NOC3LQ8WTT2 800 aaKnown RBP16.24■□□□□ 0.19
SHKBP1-211ENST00000595945 MTG1Q9BT17 334 aaPredicted RBP16.24■□□□□ 0.19
SHKBP1-211ENST00000595945 KATNAL1Q9BW62 490 aa16.24■□□□□ 0.19
SHKBP1-211ENST00000595945 THAP9Q9H5L6 903 aa16.24■□□□□ 0.19
SHKBP1-211ENST00000595945 KMT5AQ9NQR1 393 aa16.24■□□□□ 0.19
SHKBP1-211ENST00000595945 TRAF3IP3Q9Y228 551 aa16.24■□□□□ 0.19
SHKBP1-211ENST00000595945 CEP350Q5VT06 3117 aa16.24■□□□□ 0.19
SHKBP1-211ENST00000595945 NRCAMQ92823 1304 aa16.23■□□□□ 0.19
SHKBP1-211ENST00000595945 MBLAC1A4D2B0 266 aaPredicted RBP16.23■□□□□ 0.19
SHKBP1-211ENST00000595945 TGFB1I1O43294 461 aa16.23■□□□□ 0.19
SHKBP1-211ENST00000595945 SCP2P22307 547 aa16.23■□□□□ 0.19
SHKBP1-211ENST00000595945 CAPSQ13938 189 aa16.23■□□□□ 0.19
SHKBP1-211ENST00000595945 EDRF1Q3B7T1 1238 aa16.23■□□□□ 0.19
SHKBP1-211ENST00000595945 EFCAB12Q6NXP0 572 aa16.23■□□□□ 0.19
SHKBP1-211ENST00000595945 PPP4R3CPQ6ZMV5 832 aa16.23■□□□□ 0.19
SHKBP1-211ENST00000595945 LRRC55Q6ZSA7 311 aa16.23■□□□□ 0.19
SHKBP1-211ENST00000595945 LRRC71Q8N4P6 559 aa16.23■□□□□ 0.19
SHKBP1-211ENST00000595945 RETREG2Q8NC44 543 aa16.23■□□□□ 0.19
SHKBP1-211ENST00000595945 PSPC1Q8WXF1 523 aaKnown RBP16.23■□□□□ 0.19
SHKBP1-211ENST00000595945 ZBTB10Q96DT7 871 aa16.23■□□□□ 0.19
SHKBP1-211ENST00000595945 HMX1Q9NP08 348 aaPredicted RBP16.23■□□□□ 0.19
SHKBP1-211ENST00000595945 TYW1Q9NV66 732 aaKnown RBP16.23■□□□□ 0.19
SHKBP1-211ENST00000595945 CCDC169A6NNP5 214 aa16.22■□□□□ 0.19
SHKBP1-211ENST00000595945 H0YCG3 227 aa16.22■□□□□ 0.19
SHKBP1-211ENST00000595945 ATP1A3P13637 1013 aa16.22■□□□□ 0.19
SHKBP1-211ENST00000595945 ABCD1P33897 745 aa16.22■□□□□ 0.19
SHKBP1-211ENST00000595945 IGBP1P78318 339 aa16.22■□□□□ 0.19
SHKBP1-211ENST00000595945 HIC1Q14526 733 aa16.22■□□□□ 0.19
SHKBP1-211ENST00000595945 MXD4Q14582 209 aaPredicted RBP16.22■□□□□ 0.19
SHKBP1-211ENST00000595945 KCNA10Q16322 511 aa16.22■□□□□ 0.19
SHKBP1-211ENST00000595945 NFIL3Q16649 462 aa16.22■□□□□ 0.19
SHKBP1-211ENST00000595945 TAS1R3Q7RTX0 852 aa16.22■□□□□ 0.19
SHKBP1-211ENST00000595945 MAP4K3Q8IVH8 894 aa16.22■□□□□ 0.19
SHKBP1-211ENST00000595945 KSR1Q8IVT5 923 aa16.22■□□□□ 0.19
SHKBP1-211ENST00000595945 SH3TC2Q8TF17 1288 aa16.22■□□□□ 0.19
SHKBP1-211ENST00000595945 LMBR1Q8WVP7 490 aa16.22■□□□□ 0.19
SHKBP1-211ENST00000595945 PRPF31Q8WWY3 499 aaKnown RBP16.22■□□□□ 0.19
SHKBP1-211ENST00000595945 ACCSQ96QU6 501 aa16.22■□□□□ 0.19
SHKBP1-211ENST00000595945 TSG101Q99816 390 aa16.22■□□□□ 0.19
SHKBP1-211ENST00000595945 KIFC3Q9BVG8 833 aa16.22■□□□□ 0.19
SHKBP1-211ENST00000595945 SRRTQ9BXP5 876 aaKnown RBP16.22■□□□□ 0.19
SHKBP1-211ENST00000595945 SUGCTQ9HAC7 445 aa16.22■□□□□ 0.19
SHKBP1-211ENST00000595945 SETD4Q9NVD3 440 aa16.22■□□□□ 0.19
SHKBP1-211ENST00000595945 SUCLA2Q9P2R7 463 aaPredicted RBP16.22■□□□□ 0.19
SHKBP1-211ENST00000595945 ASAP2O43150 1006 aa16.21■□□□□ 0.19
SHKBP1-211ENST00000595945 CLCN3P51790 818 aa16.21■□□□□ 0.19
SHKBP1-211ENST00000595945 LAMTOR4Q0VGL1 99 aa16.21■□□□□ 0.19
SHKBP1-211ENST00000595945 TPD52L1Q16890 204 aaPredicted RBP16.21■□□□□ 0.19
SHKBP1-211ENST00000595945 CDCA2Q69YH5 1023 aaPredicted RBP16.21■□□□□ 0.19
SHKBP1-211ENST00000595945 CXCL17Q6UXB2 119 aa16.21■□□□□ 0.19
SHKBP1-211ENST00000595945 APTXQ7Z2E3 356 aaKnown RBP16.21■□□□□ 0.19
SHKBP1-211ENST00000595945 CSGALNACT2Q8N6G5 542 aa16.21■□□□□ 0.19
SHKBP1-211ENST00000595945 PCSK9Q8NBP7 692 aaKnown RBP16.21■□□□□ 0.19
SHKBP1-211ENST00000595945 TMEM174Q8WUU8 243 aa16.21■□□□□ 0.19
SHKBP1-211ENST00000595945 CEP63Q96MT8 703 aa16.21■□□□□ 0.19
SHKBP1-211ENST00000595945 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.21■□□□□ 0.199e-6■■■■■ 32.4
SHKBP1-211ENST00000595945 IKZF4Q9H2S9 585 aa16.21■□□□□ 0.19
SHKBP1-211ENST00000595945 TMEM134Q9H6X4 195 aa16.21■□□□□ 0.19
SHKBP1-211ENST00000595945 TMEM206Q9H813 350 aa16.21■□□□□ 0.19
SHKBP1-211ENST00000595945 LIMA1Q9UHB6 759 aaKnown RBP16.21■□□□□ 0.19
SHKBP1-211ENST00000595945 TBX20Q9UMR3 447 aa16.21■□□□□ 0.19
SHKBP1-211ENST00000595945 DENND3A2RUS2 1198 aa16.2■□□□□ 0.18
SHKBP1-211ENST00000595945 CALUO43852 315 aaPredicted RBP16.2■□□□□ 0.18
SHKBP1-211ENST00000595945 ASGR1P07306 291 aa16.2■□□□□ 0.18
SHKBP1-211ENST00000595945 DNM2P50570 870 aa16.2■□□□□ 0.18
SHKBP1-211ENST00000595945 SNRPFP62306 86 aaKnown RBP16.2■□□□□ 0.18
SHKBP1-211ENST00000595945 FANCCQ00597 558 aa16.2■□□□□ 0.18
SHKBP1-211ENST00000595945 POU5F1BQ06416 359 aa16.2■□□□□ 0.18
SHKBP1-211ENST00000595945 SPAG1Q07617 926 aa16.2■□□□□ 0.18
SHKBP1-211ENST00000595945 NFRKBQ6P4R8 1299 aa16.2■□□□□ 0.18
SHKBP1-211ENST00000595945 CTU1Q7Z7A3 348 aaKnown RBP16.2■□□□□ 0.18
SHKBP1-211ENST00000595945 RNF180Q86T96 592 aa16.2■□□□□ 0.18
SHKBP1-211ENST00000595945 SESTD1Q86VW0 696 aa16.2■□□□□ 0.18
SHKBP1-211ENST00000595945 IFNLR1Q8IU57 520 aaPredicted RBP16.2■□□□□ 0.18
SHKBP1-211ENST00000595945 KIAA0319LQ8IZA0 1049 aa16.2■□□□□ 0.18
SHKBP1-211ENST00000595945 TSEN34Q9BSV6 310 aaKnown RBP16.2■□□□□ 0.18
SHKBP1-211ENST00000595945 GBP3Q9H0R5 595 aa16.2■□□□□ 0.18
SHKBP1-211ENST00000595945 UNC93B1Q9H1C4 597 aa16.2■□□□□ 0.18
SHKBP1-211ENST00000595945 HDAC6Q9UBN7 1215 aa16.2■□□□□ 0.18
SHKBP1-211ENST00000595945 SMIM35A0A1B0GVV1 85 aa16.19■□□□□ 0.18
SHKBP1-211ENST00000595945 C17orf102A2RUQ5 167 aa16.19■□□□□ 0.18
SHKBP1-211ENST00000595945 LRRC10BA6NIK2 292 aa16.19■□□□□ 0.18
SHKBP1-211ENST00000595945 LRRIQ4A6NIV6 560 aa16.19■□□□□ 0.18
SHKBP1-211ENST00000595945 CABYRO75952 493 aa16.19■□□□□ 0.18
SHKBP1-211ENST00000595945 FGFR1OPO95684 399 aaKnown RBP16.19■□□□□ 0.18
SHKBP1-211ENST00000595945 EEF1GP26641 437 aaKnown RBP16.19■□□□□ 0.18
SHKBP1-211ENST00000595945 TMOD1P28289 359 aa16.19■□□□□ 0.18
SHKBP1-211ENST00000595945 ZNF75DP51815 510 aa16.19■□□□□ 0.18
SHKBP1-211ENST00000595945 FKBP3Q00688 224 aaKnown RBP16.19■□□□□ 0.18
SHKBP1-211ENST00000595945 MYBPC2Q14324 1141 aa16.19■□□□□ 0.18
SHKBP1-211ENST00000595945 NBPF20Q3BBV1 942 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms