RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 CBWD3Q5JTY5 395 aa21.48■■□□□ 1.03
CLIP3-206ENST00000593074 CBWD5Q5RIA9 395 aa21.48■■□□□ 1.03
CLIP3-206ENST00000593074 NFRKBQ6P4R8 1299 aa21.48■■□□□ 1.03
CLIP3-206ENST00000593074 COG1Q8WTW3 980 aa21.48■■□□□ 1.03
CLIP3-206ENST00000593074 A1CFQ9NQ94 594 aaKnown RBP21.48■■□□□ 1.03
CLIP3-206ENST00000593074 WDR90Q96KV7 1748 aa21.47■■□□□ 1.03
CLIP3-206ENST00000593074 TMEM150BA6NC51 233 aa21.47■■□□□ 1.03
CLIP3-206ENST00000593074 C9orf131Q5VYM1 1079 aa21.47■■□□□ 1.03
CLIP3-206ENST00000593074 GJB7Q6PEY0 223 aa21.47■■□□□ 1.03
CLIP3-206ENST00000593074 PACSIN1Q9BY11 444 aa21.47■■□□□ 1.03
CLIP3-206ENST00000593074 POLR2AP24928 1970 aaKnown RBP21.47■■□□□ 1.03
CLIP3-206ENST00000593074 TRIM49P0CI25 452 aa21.46■■□□□ 1.03
CLIP3-206ENST00000593074 TRIM49CP0CI26 452 aa21.46■■□□□ 1.03
CLIP3-206ENST00000593074 IREB2P48200 963 aaKnown RBP21.46■■□□□ 1.03
CLIP3-206ENST00000593074 NCKAP1LP55160 1127 aa21.46■■□□□ 1.03
CLIP3-206ENST00000593074 MYL7Q01449 175 aa21.46■■□□□ 1.03
CLIP3-206ENST00000593074 UTP14CQ5TAP6 766 aaKnown RBP21.46■■□□□ 1.03
CLIP3-206ENST00000593074 SLC17A8Q8NDX2 589 aa21.46■■□□□ 1.03
CLIP3-206ENST00000593074 MOV10L1Q9BXT6 1211 aaKnown RBP21.46■■□□□ 1.03
CLIP3-206ENST00000593074 ABCB6Q9NP58 842 aa21.46■■□□□ 1.03
CLIP3-206ENST00000593074 PRDM10Q9NQV6 1147 aa21.46■■□□□ 1.03
CLIP3-206ENST00000593074 NAGPAQ9UK23 515 aa21.46■■□□□ 1.03
CLIP3-206ENST00000593074 L1RE1Q9UN81 338 aa21.46■■□□□ 1.03
CLIP3-206ENST00000593074 F8VZ95 297 aa21.46■■□□□ 1.03
CLIP3-206ENST00000593074 FERP16591 822 aa21.46■■□□□ 1.03
CLIP3-206ENST00000593074 SNRPFP62306 86 aaKnown RBP21.46■■□□□ 1.03
CLIP3-206ENST00000593074 INTS2Q9H0H0 1204 aaKnown RBP21.46■■□□□ 1.03
CLIP3-206ENST00000593074 PCDHA10Q9Y5I2 948 aa21.46■■□□□ 1.03
CLIP3-206ENST00000593074 WDR81Q562E7 1941 aa21.45■■□□□ 1.02
CLIP3-206ENST00000593074 NCK2O43639 380 aa21.45■■□□□ 1.02
CLIP3-206ENST00000593074 KCNA2P16389 499 aa21.45■■□□□ 1.02
CLIP3-206ENST00000593074 YBX3P16989 372 aaKnown RBP eCLIP21.45■■□□□ 1.02
CLIP3-206ENST00000593074 MCM3P25205 808 aa21.45■■□□□ 1.02
CLIP3-206ENST00000593074 STAT1P42224 750 aa21.45■■□□□ 1.02
CLIP3-206ENST00000593074 TREML2Q5T2D2 321 aa21.45■■□□□ 1.02
CLIP3-206ENST00000593074 INTS8Q75QN2 995 aaKnown RBP21.45■■□□□ 1.02
CLIP3-206ENST00000593074 HAUS6Q7Z4H7 955 aa21.45■■□□□ 1.02
CLIP3-206ENST00000593074 CHST13Q8NET6 341 aa21.45■■□□□ 1.02
CLIP3-206ENST00000593074 SH2D3AQ9BRG2 576 aa21.45■■□□□ 1.02
CLIP3-206ENST00000593074 STK33Q9BYT3 514 aa21.45■■□□□ 1.02
CLIP3-206ENST00000593074 ST7Q9NRC1 585 aa21.45■■□□□ 1.02
CLIP3-206ENST00000593074 KIAA1217Q5T5P2 1943 aa21.45■■□□□ 1.02
CLIP3-206ENST00000593074 PALMO75781 387 aa21.44■■□□□ 1.02
CLIP3-206ENST00000593074 STAM2O75886 525 aa21.44■■□□□ 1.02
CLIP3-206ENST00000593074 RGS20O76081 388 aa21.44■■□□□ 1.02
CLIP3-206ENST00000593074 GFPT2O94808 682 aa21.44■■□□□ 1.02
CLIP3-206ENST00000593074 NAP1L1P55209 391 aaKnown RBP21.44■■□□□ 1.02
CLIP3-206ENST00000593074 XKR9Q5GH70 373 aa21.44■■□□□ 1.02
CLIP3-206ENST00000593074 PLA2G4FQ68DD2 849 aa21.44■■□□□ 1.02
CLIP3-206ENST00000593074 DPY19L2Q6NUT2 758 aa21.44■■□□□ 1.02
CLIP3-206ENST00000593074 ANO5Q75V66 913 aa21.44■■□□□ 1.02
CLIP3-206ENST00000593074 MSL3Q8N5Y2 521 aaKnown RBP21.44■■□□□ 1.02
CLIP3-206ENST00000593074 CNKSR2Q8WXI2 1034 aa21.44■■□□□ 1.02
CLIP3-206ENST00000593074 GPRC5CQ9NQ84 441 aa21.44■■□□□ 1.02
CLIP3-206ENST00000593074 TISP43B9A030 160 aa21.44■■□□□ 1.02
CLIP3-206ENST00000593074 MAPK13O15264 365 aa21.44■■□□□ 1.02
CLIP3-206ENST00000593074 SOX5P35711 763 aa21.44■■□□□ 1.02
CLIP3-206ENST00000593074 ALKBH5Q6P6C2 394 aaKnown RBP21.44■■□□□ 1.02
CLIP3-206ENST00000593074 VPS36Q86VN1 386 aa21.44■■□□□ 1.02
CLIP3-206ENST00000593074 MMGT1Q8N4V1 131 aa21.44■■□□□ 1.02
CLIP3-206ENST00000593074 CDHR1Q96JP9 859 aa21.44■■□□□ 1.02
CLIP3-206ENST00000593074 IWS1Q96ST2 819 aa21.44■■□□□ 1.02
CLIP3-206ENST00000593074 APEX2Q9UBZ4 518 aa21.44■■□□□ 1.02
CLIP3-206ENST00000593074 ARID2Q68CP9 1835 aa21.44■■□□□ 1.02
CLIP3-206ENST00000593074 LCTP09848 1927 aa21.44■■□□□ 1.02
CLIP3-206ENST00000593074 NFASCO94856 1347 aa21.43■■□□□ 1.02
CLIP3-206ENST00000593074 KRT13P13646 458 aa21.43■■□□□ 1.02
CLIP3-206ENST00000593074 RFX1P22670 979 aa21.43■■□□□ 1.02
CLIP3-206ENST00000593074 NPEPPSP55786 919 aa21.43■■□□□ 1.02
CLIP3-206ENST00000593074 C2orf54Q08AI8 447 aa21.43■■□□□ 1.02
CLIP3-206ENST00000593074 HDXQ7Z353 690 aa21.43■■□□□ 1.02
CLIP3-206ENST00000593074 FMNL3Q8IVF7 1028 aa21.43■■□□□ 1.02
CLIP3-206ENST00000593074 OLIG1Q8TAK6 271 aa21.43■■□□□ 1.02
CLIP3-206ENST00000593074 CBWD1Q9BRT8 395 aa21.43■■□□□ 1.02
CLIP3-206ENST00000593074 GPR88Q9GZN0 384 aa21.43■■□□□ 1.02
CLIP3-206ENST00000593074 RNF216Q9NWF9 866 aaPredicted RBP21.43■■□□□ 1.02
CLIP3-206ENST00000593074 DNAJC12Q9UKB3 198 aa21.43■■□□□ 1.02
CLIP3-206ENST00000593074 GRID2IPA4D2P6 1211 aa21.43■■□□□ 1.02
CLIP3-206ENST00000593074 EVI5O60447 810 aa21.43■■□□□ 1.02
CLIP3-206ENST00000593074 PEX3P56589 373 aa21.43■■□□□ 1.02
CLIP3-206ENST00000593074 MEI1Q5TIA1 1274 aa21.43■■□□□ 1.02
CLIP3-206ENST00000593074 LBX2Q6XYB7 198 aa21.43■■□□□ 1.02
CLIP3-206ENST00000593074 GADL1Q6ZQY3 521 aa21.43■■□□□ 1.02
CLIP3-206ENST00000593074 LMO3Q8TAP4 145 aa21.43■■□□□ 1.02
CLIP3-206ENST00000593074 UBE2Q2Q8WVN8 375 aa21.43■■□□□ 1.02
CLIP3-206ENST00000593074 HVCN1Q96D96 273 aa21.43■■□□□ 1.02
CLIP3-206ENST00000593074 ELP3Q9H9T3 547 aa21.43■■□□□ 1.02
CLIP3-206ENST00000593074 HSPBP1Q9NZL4 362 aa21.43■■□□□ 1.02
CLIP3-206ENST00000593074 RNF14Q9UBS8 474 aa21.43■■□□□ 1.02
CLIP3-206ENST00000593074 SLC16A4O15374 487 aa21.42■■□□□ 1.02
CLIP3-206ENST00000593074 CXCR5P32302 372 aa21.42■■□□□ 1.02
CLIP3-206ENST00000593074 NF2P35240 595 aa21.42■■□□□ 1.02
CLIP3-206ENST00000593074 MCCD1P59942 119 aaPredicted RBP21.42■■□□□ 1.02
CLIP3-206ENST00000593074 PPATQ06203 517 aa21.42■■□□□ 1.02
CLIP3-206ENST00000593074 DRAP1Q14919 205 aaPredicted RBP21.42■■□□□ 1.02
CLIP3-206ENST00000593074 GNPTABQ3T906 1256 aa21.42■■□□□ 1.02
CLIP3-206ENST00000593074 FAM102BQ5T8I3 360 aa21.42■■□□□ 1.02
CLIP3-206ENST00000593074 XXYLT1Q8NBI6 393 aa21.42■■□□□ 1.02
CLIP3-206ENST00000593074 RDH13Q8NBN7 331 aa21.42■■□□□ 1.02
CLIP3-206ENST00000593074 SPATA4Q8NEY3 305 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms