RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	DBR1	Q9UK59	544 aa	Known RBP	10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	MTUS1	Q9ULD2	1270 aa		10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	PCDHB7	Q9Y5E2	793 aa		10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	STK24	Q9Y6E0	443 aa		10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	SPTBN5	Q9NRC6	3674 aa	Known RBP	10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	VCAN	P13611	3396 aa		10.23	□□□□□ -0.77
DNMT1-223	ENST00000591239	ASAP2	O43150	1006 aa		10.23	□□□□□ -0.77
DNMT1-223	ENST00000591239	USO1	O60763	962 aa	Known RBP	10.23	□□□□□ -0.77
DNMT1-223	ENST00000591239	ZSCAN20	P17040	1043 aa	Predicted RBP	10.23	□□□□□ -0.77
DNMT1-223	ENST00000591239	IBSP	P21815	317 aa	Predicted RBP	10.23	□□□□□ -0.77
DNMT1-223	ENST00000591239	SFPQ	P23246	707 aa	Known RBP eCLIP	10.23	□□□□□ -0.77
DNMT1-223	ENST00000591239	CDC25A	P30304	524 aa		10.23	□□□□□ -0.77
DNMT1-223	ENST00000591239	FAM189B	P81408	668 aa		10.23	□□□□□ -0.77
DNMT1-223	ENST00000591239	MXD4	Q14582	209 aa	Predicted RBP	10.23	□□□□□ -0.77
DNMT1-223	ENST00000591239	ECM1	Q16610	540 aa		10.23	□□□□□ -0.77
DNMT1-223	ENST00000591239	ARL6IP4	Q66PJ3	421 aa	Known RBP	10.23	□□□□□ -0.77
DNMT1-223	ENST00000591239	HSCB	Q8IWL3	235 aa		10.23	□□□□□ -0.77
DNMT1-223	ENST00000591239	FIBCD1	Q8N539	461 aa		10.23	□□□□□ -0.77
DNMT1-223	ENST00000591239	C17orf80	Q9BSJ5	609 aa		10.23	□□□□□ -0.77
DNMT1-223	ENST00000591239	RC3H2	Q9HBD1	1191 aa	Known RBP	10.23	□□□□□ -0.77
DNMT1-223	ENST00000591239	ATP6V0A4	Q9HBG4	840 aa		10.23	□□□□□ -0.77
DNMT1-223	ENST00000591239	LRFN2	Q9ULH4	789 aa		10.23	□□□□□ -0.77
DNMT1-223	ENST00000591239	ADGRA3	Q8IWK6	1321 aa		10.23	□□□□□ -0.77
DNMT1-223	ENST00000591239	ARID2	Q68CP9	1835 aa		10.23	□□□□□ -0.77
DNMT1-223	ENST00000591239	ARHGEF35	A5YM69	484 aa		10.22	□□□□□ -0.77
DNMT1-223	ENST00000591239	VWA3A	A6NCI4	1184 aa		10.22	□□□□□ -0.77
DNMT1-223	ENST00000591239	PP2D1	A8MPX8	630 aa		10.22	□□□□□ -0.77
DNMT1-223	ENST00000591239	ARL2	P36404	184 aa		10.22	□□□□□ -0.77
DNMT1-223	ENST00000591239	PLCB2	Q00722	1185 aa		10.22	□□□□□ -0.77
DNMT1-223	ENST00000591239	BTG3	Q14201	252 aa	Predicted RBP	10.22	□□□□□ -0.77
DNMT1-223	ENST00000591239	EPC2	Q52LR7	807 aa		10.22	□□□□□ -0.77
DNMT1-223	ENST00000591239	KRT79	Q5XKE5	535 aa		10.22	□□□□□ -0.77
DNMT1-223	ENST00000591239	CATSPER4	Q7RTX7	472 aa		10.22	□□□□□ -0.77
DNMT1-223	ENST00000591239	SRGAP1	Q7Z6B7	1085 aa		10.22	□□□□□ -0.77
DNMT1-223	ENST00000591239	RNF149	Q8NC42	400 aa		10.22	□□□□□ -0.77
DNMT1-223	ENST00000591239	FBXO22	Q8NEZ5	403 aa		10.22	□□□□□ -0.77
DNMT1-223	ENST00000591239	SNX29	Q8TEQ0	813 aa		10.22	□□□□□ -0.77
DNMT1-223	ENST00000591239	CLP1	Q92989	425 aa	Known RBP	10.22	□□□□□ -0.77
DNMT1-223	ENST00000591239	SAMD11	Q96NU1	681 aa		10.22	□□□□□ -0.77
DNMT1-223	ENST00000591239	ELAC1	Q9H777	363 aa	Known RBP	10.22	□□□□□ -0.77
DNMT1-223	ENST00000591239	MINDY3	Q9H8M7	445 aa		10.22	□□□□□ -0.77
DNMT1-223	ENST00000591239	CHST12	Q9NRB3	414 aa		10.22	□□□□□ -0.77
DNMT1-223	ENST00000591239	DDX19A	Q9NUU7	478 aa	Known RBP	10.22	□□□□□ -0.77
DNMT1-223	ENST00000591239	KIAA1024	Q9UPX6	916 aa		10.22	□□□□□ -0.77
DNMT1-223	ENST00000591239	COL4A6	Q14031	1691 aa		10.22	□□□□□ -0.77
DNMT1-223	ENST00000591239		A0A0U1RQF3	1178 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	STX6	O43752	255 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	GTPBP6	O43824	516 aa	Predicted RBP	10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	LPXN	O60711	386 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	BMP15	O95972	392 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	HSP90AA1	P07900	732 aa	Known RBP	10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	LINC00271	P0C7V0	271 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	POU3F3	P20264	500 aa	Predicted RBP	10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	GLRA2	P23416	452 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	PHKA2	P46019	1235 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	GATM	P50440	423 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	PTEN	P60484	403 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	POU5F1B	Q06416	359 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	REST	Q13127	1097 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	GRB10	Q13322	594 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	TFDP1	Q14186	410 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	SF3A1	Q15459	793 aa	Known RBP	10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	PAN2	Q504Q3	1202 aa	Known RBP	10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	FAM102B	Q5T8I3	360 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	PADI6	Q6TGC4	694 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	MAEA	Q7L5Y9	396 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	ECHDC2	Q86YB7	292 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	TMEM192	Q8IY95	271 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	CMTR2	Q8IYT2	770 aa	Known RBP	10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	MCPH1	Q8NEM0	835 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	ASAP3	Q8TDY4	903 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	GDPD5	Q8WTR4	605 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	MMTAG2	Q9BU76	263 aa	Known RBP	10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	POLR3F	Q9H1D9	316 aa	Predicted RBP	10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	BHMT2	Q9H2M3	363 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	GPRC5C	Q9NQ84	441 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	TMEM161A	Q9NX61	479 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	DACT1	Q9NYF0	836 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	DNM3	Q9UQ16	869 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	MTMR6	Q9Y217	621 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	PIN4	Q9Y237	131 aa	Known RBP	10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	MTCH2	Q9Y6C9	303 aa		10.21	□□□□□ -0.77
DNMT1-223	ENST00000591239	FGFR1	P11362	822 aa		10.2	□□□□□ -0.78
DNMT1-223	ENST00000591239	CYP11B2	P19099	503 aa		10.2	□□□□□ -0.78
DNMT1-223	ENST00000591239	HOXA11	P31270	313 aa	Predicted RBP	10.2	□□□□□ -0.78
DNMT1-223	ENST00000591239	CTNNB1	P35222	781 aa		10.2	□□□□□ -0.78
DNMT1-223	ENST00000591239	BMPR1A	P36894	532 aa		10.2	□□□□□ -0.78
DNMT1-223	ENST00000591239	CAPS	Q13938	189 aa		10.2	□□□□□ -0.78
DNMT1-223	ENST00000591239	CCDC85B	Q15834	202 aa	Predicted RBP	10.2	□□□□□ -0.78
DNMT1-223	ENST00000591239	HYI	Q5T013	277 aa		10.2	□□□□□ -0.78
DNMT1-223	ENST00000591239	TWF2	Q6IBS0	349 aa	Known RBP	10.2	□□□□□ -0.78
DNMT1-223	ENST00000591239	FAM173B	Q6P4H8	233 aa		10.2	□□□□□ -0.78
DNMT1-223	ENST00000591239	MICALL1	Q8N3F8	863 aa		10.2	□□□□□ -0.78
DNMT1-223	ENST00000591239	RNF169	Q8NCN4	708 aa		10.2	□□□□□ -0.78
DNMT1-223	ENST00000591239	PPM1E	Q8WY54	764 aa		10.2	□□□□□ -0.78
DNMT1-223	ENST00000591239	AK8	Q96MA6	479 aa		10.2	□□□□□ -0.78
DNMT1-223	ENST00000591239	TRAIP	Q9BWF2	469 aa		10.2	□□□□□ -0.78
DNMT1-223	ENST00000591239	NFKBIZ	Q9BYH8	718 aa		10.2	□□□□□ -0.78
DNMT1-223	ENST00000591239	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	10.2	□□□□□ -0.78
DNMT1-223	ENST00000591239	AGPAT5	Q9NUQ2	364 aa		10.2	□□□□□ -0.78

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