RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 MRPL43Q8N983 215 aaKnown RBP13.23□□□□□ -0.29
CLIP3-204ENST00000590559 PRSS33Q8NF86 280 aa13.23□□□□□ -0.29
CLIP3-204ENST00000590559 CHST12Q9NRB3 414 aa13.23□□□□□ -0.29
CLIP3-204ENST00000590559 SPG21Q9NZD8 308 aa13.23□□□□□ -0.29
CLIP3-204ENST00000590559 TCEAL9Q9UHQ7 104 aa13.23□□□□□ -0.29
CLIP3-204ENST00000590559 PUF60Q9UHX1 559 aaKnown RBP13.23□□□□□ -0.29
CLIP3-204ENST00000590559 TMEM150BA6NC51 233 aa13.22□□□□□ -0.29
CLIP3-204ENST00000590559 C2orf71A6NGG8 1288 aa13.22□□□□□ -0.29
CLIP3-204ENST00000590559 CHMP2AO43633 222 aa13.22□□□□□ -0.29
CLIP3-204ENST00000590559 MAFO75444 373 aaPredicted RBP13.22□□□□□ -0.29
CLIP3-204ENST00000590559 CSDE1O75534 798 aaKnown RBP13.22□□□□□ -0.29
CLIP3-204ENST00000590559 TDP2O95551 362 aa13.22□□□□□ -0.29
CLIP3-204ENST00000590559 TECP42680 631 aa13.22□□□□□ -0.29
CLIP3-204ENST00000590559 PHKA2P46019 1235 aa13.22□□□□□ -0.29
CLIP3-204ENST00000590559 SIGLEC14Q08ET2 396 aa13.22□□□□□ -0.29
CLIP3-204ENST00000590559 TBC1D8BQ0IIM8 1120 aa13.22□□□□□ -0.29
CLIP3-204ENST00000590559 XKR3Q5GH77 459 aa13.22□□□□□ -0.29
CLIP3-204ENST00000590559 ANO5Q75V66 913 aa13.22□□□□□ -0.29
CLIP3-204ENST00000590559 HELQQ8TDG4 1101 aa13.22□□□□□ -0.29
CLIP3-204ENST00000590559 RSPH1Q8WYR4 309 aa13.22□□□□□ -0.29
CLIP3-204ENST00000590559 ZNF274Q96GC6 653 aaPredicted RBP13.22□□□□□ -0.29
CLIP3-204ENST00000590559 RPGRIP1Q96KN7 1286 aa13.22□□□□□ -0.29
CLIP3-204ENST00000590559 C22orf23Q9BZE7 217 aa13.22□□□□□ -0.29
CLIP3-204ENST00000590559 ENTPD7Q9NQZ7 604 aa13.22□□□□□ -0.29
CLIP3-204ENST00000590559 IRAK3Q9Y616 596 aa13.22□□□□□ -0.29
CLIP3-204ENST00000590559 ZNF623O75123 536 aa13.21□□□□□ -0.29
CLIP3-204ENST00000590559 DEXIO95424 95 aa13.21□□□□□ -0.29
CLIP3-204ENST00000590559 NLRP5P59047 1200 aa13.21□□□□□ -0.29
CLIP3-204ENST00000590559 KRT17Q04695 432 aa13.21□□□□□ -0.29
CLIP3-204ENST00000590559 PTPN21Q16825 1174 aa13.21□□□□□ -0.29
CLIP3-204ENST00000590559 MIER3Q7Z3K6 550 aa13.21□□□□□ -0.29
CLIP3-204ENST00000590559 ZNF410Q86VK4 478 aa13.21□□□□□ -0.29
CLIP3-204ENST00000590559 TMEM173Q86WV6 379 aaPredicted RBP13.21□□□□□ -0.29
CLIP3-204ENST00000590559 ABI1Q8IZP0 508 aa13.21□□□□□ -0.29
CLIP3-204ENST00000590559 BLIDQ8IZY5 108 aa13.21□□□□□ -0.29
CLIP3-204ENST00000590559 FBXL6Q8N531 539 aa13.21□□□□□ -0.29
CLIP3-204ENST00000590559 PBXIP1Q96AQ6 731 aa13.21□□□□□ -0.29
CLIP3-204ENST00000590559 MRPL9Q9BYD2 267 aaKnown RBP13.21□□□□□ -0.29
CLIP3-204ENST00000590559 ZBP1Q9H171 429 aa13.21□□□□□ -0.29
CLIP3-204ENST00000590559 DACT1Q9NYF0 836 aa13.21□□□□□ -0.29
CLIP3-204ENST00000590559 HCFC2Q9Y5Z7 792 aa13.21□□□□□ -0.29
CLIP3-204ENST00000590559 C2orf16Q68DN1 1984 aa13.21□□□□□ -0.29
CLIP3-204ENST00000590559 FRYLO94915 3013 aa13.21□□□□□ -0.3
CLIP3-204ENST00000590559 A0A087WZ62 844 aa13.2□□□□□ -0.3
CLIP3-204ENST00000590559 MEIS3P2A8K0S8 358 aa13.2□□□□□ -0.3
CLIP3-204ENST00000590559 CLASP2O75122 1294 aaKnown RBP13.2□□□□□ -0.3
CLIP3-204ENST00000590559 REC8O95072 547 aa13.2□□□□□ -0.3
CLIP3-204ENST00000590559 SRGAP2BP0DMP2 458 aa13.2□□□□□ -0.3
CLIP3-204ENST00000590559 BCAR1P56945 870 aa13.2□□□□□ -0.3
CLIP3-204ENST00000590559 SSRP1Q08945 709 aaKnown RBP13.2□□□□□ -0.3
CLIP3-204ENST00000590559 TCF15Q12870 199 aa13.2□□□□□ -0.3
CLIP3-204ENST00000590559 SMC1AQ14683 1233 aaKnown RBP13.2□□□□□ -0.3
CLIP3-204ENST00000590559 MTERF2Q49AM1 385 aa13.2□□□□□ -0.3
CLIP3-204ENST00000590559 GALNT17Q6IS24 598 aa13.2□□□□□ -0.3
CLIP3-204ENST00000590559 LLGL2Q6P1M3 1020 aa13.2□□□□□ -0.3
CLIP3-204ENST00000590559 TMC7Q7Z402 723 aa13.2□□□□□ -0.3
CLIP3-204ENST00000590559 NLRP7Q8WX94 980 aa13.2□□□□□ -0.3
CLIP3-204ENST00000590559 CASP10Q92851 521 aa13.2□□□□□ -0.3
CLIP3-204ENST00000590559 AIFM3Q96NN9 605 aa13.2□□□□□ -0.3
CLIP3-204ENST00000590559 PHOX2BQ99453 314 aa13.2□□□□□ -0.3
CLIP3-204ENST00000590559 SH2D3AQ9BRG2 576 aa13.2□□□□□ -0.3
CLIP3-204ENST00000590559 FDXACB1Q9BRP7 624 aaPredicted RBP13.2□□□□□ -0.3
CLIP3-204ENST00000590559 GCOM2Q9BZD3 368 aaPredicted RBP13.2□□□□□ -0.3
CLIP3-204ENST00000590559 TM6SF1Q9BZW5 370 aa13.2□□□□□ -0.3
CLIP3-204ENST00000590559 ADAM7Q9H2U9 754 aa13.2□□□□□ -0.3
CLIP3-204ENST00000590559 IFT122Q9HBG6 1241 aa13.2□□□□□ -0.3
CLIP3-204ENST00000590559 KCNMB3Q9NPA1 279 aa13.2□□□□□ -0.3
CLIP3-204ENST00000590559 SEPT9Q9UHD8 586 aaPredicted RBP13.2□□□□□ -0.3
CLIP3-204ENST00000590559 CDH22Q9UJ99 828 aa13.2□□□□□ -0.3
CLIP3-204ENST00000590559 VAV3Q9UKW4 847 aa13.2□□□□□ -0.3
CLIP3-204ENST00000590559 PLXNA3P51805 1871 aa13.19□□□□□ -0.3
CLIP3-204ENST00000590559 NT5C1B-RDH14C9J2C7 533 aa13.19□□□□□ -0.3
CLIP3-204ENST00000590559 EML1O00423 815 aa13.19□□□□□ -0.3
CLIP3-204ENST00000590559 SLC37A4O43826 429 aa13.19□□□□□ -0.3
CLIP3-204ENST00000590559 ITIH3Q06033 890 aa13.19□□□□□ -0.3
CLIP3-204ENST00000590559 PPP2R5CQ13362 524 aa13.19□□□□□ -0.3
CLIP3-204ENST00000590559 TRIM22Q8IYM9 498 aa13.19□□□□□ -0.3
CLIP3-204ENST00000590559 RNF169Q8NCN4 708 aa13.19□□□□□ -0.3
CLIP3-204ENST00000590559 BCL7CQ8WUZ0 217 aaPredicted RBP13.19□□□□□ -0.3
CLIP3-204ENST00000590559 VN1R3Q9BXE9 311 aa13.19□□□□□ -0.3
CLIP3-204ENST00000590559 POMKQ9H5K3 350 aa13.19□□□□□ -0.3
CLIP3-204ENST00000590559 NRDE2Q9H7Z3 1164 aa13.19□□□□□ -0.3
CLIP3-204ENST00000590559 FAM105AQ9NUU6 356 aa13.19□□□□□ -0.3
CLIP3-204ENST00000590559 TBC1D13Q9NVG8 400 aa13.19□□□□□ -0.3
CLIP3-204ENST00000590559 SUCLA2Q9P2R7 463 aaPredicted RBP13.19□□□□□ -0.3
CLIP3-204ENST00000590559 WRAP73Q9P2S5 460 aaPredicted RBP13.19□□□□□ -0.3
CLIP3-204ENST00000590559 CACNA1HO95180 2353 aa13.18□□□□□ -0.3
CLIP3-204ENST00000590559 B4GALT3O60512 393 aa13.18□□□□□ -0.3
CLIP3-204ENST00000590559 OFD1O75665 1012 aa13.18□□□□□ -0.3
CLIP3-204ENST00000590559 GALTP07902 379 aa13.18□□□□□ -0.3
CLIP3-204ENST00000590559 CTSAP10619 480 aa13.18□□□□□ -0.3
CLIP3-204ENST00000590559 SFPQP23246 707 aaKnown RBP eCLIP13.18□□□□□ -0.3
CLIP3-204ENST00000590559 ALDH7A1P49419 539 aaKnown RBP13.18□□□□□ -0.3
CLIP3-204ENST00000590559 DNM2P50570 870 aa13.18□□□□□ -0.3
CLIP3-204ENST00000590559 POLGP54098 1239 aaPredicted RBP13.18□□□□□ -0.3
CLIP3-204ENST00000590559 PSMC5P62195 406 aa13.18□□□□□ -0.3
CLIP3-204ENST00000590559 TPRNQ4KMQ1 711 aa13.18□□□□□ -0.3
CLIP3-204ENST00000590559 PPP4R3AQ6IN85 833 aa13.18□□□□□ -0.3
CLIP3-204ENST00000590559 MRPL10Q7Z7H8 261 aaKnown RBP13.18□□□□□ -0.3
CLIP3-204ENST00000590559 DDX53Q86TM3 631 aaKnown RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms