RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 TMCO3Q6UWJ1 677 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 TMEM184AQ6ZMB5 413 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 CLEC10AQ8IUN9 316 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 CELF5Q8N6W0 485 aaKnown RBP4.69□□□□□ -1.66
LIG3-211ENST00000588713 REPS2Q8NFH8 660 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 BICD2Q8TD16 824 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 CASP10Q92851 521 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 HPS1Q92902 700 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 JAKMIP1Q96N16 626 aaKnown RBP4.69□□□□□ -1.66
LIG3-211ENST00000588713 REPIN1Q9BWE0 567 aaKnown RBP4.69□□□□□ -1.66
LIG3-211ENST00000588713 TEX13BQ9BXU2 312 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 UBXN6Q9BZV1 441 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 NAT10Q9H0A0 1025 aaKnown RBP4.69□□□□□ -1.66
LIG3-211ENST00000588713 DNAJC25Q9H1X3 360 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 RASSF4Q9H2L5 321 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 ZSCAN16Q9H4T2 348 aaPredicted RBP4.69□□□□□ -1.66
LIG3-211ENST00000588713 SENP2Q9HC62 589 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 BRMS1Q9HCU9 246 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 ANO10Q9NW15 660 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 ZNF446Q9NWS9 450 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 DACT1Q9NYF0 836 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 HMG20BQ9P0W2 317 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 USTQ9Y2C2 406 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 RAXQ9Y2V3 346 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 MSRB2Q9Y3D2 182 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 CTDP1Q9Y5B0 961 aaPredicted RBP4.69□□□□□ -1.66
LIG3-211ENST00000588713 FHOD1Q9Y613 1164 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 AKAP13Q12802 2813 aa4.69□□□□□ -1.66
LIG3-211ENST00000588713 CACNA1IQ9P0X4 2223 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 GOLGA6L9A6NEM1 432 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 ASB14A6NK59 587 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 USP27XA6NNY8 438 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 EFCAB8A8MWE9 144 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 GRM8O00222 908 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 ATXN7O15265 892 aaPredicted RBP4.68□□□□□ -1.66
LIG3-211ENST00000588713 IGSF3O75054 1194 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 TADA3O75528 432 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 DXOO77932 396 aaKnown RBP4.68□□□□□ -1.66
LIG3-211ENST00000588713 CTSHP09668 335 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 UBTFL1P0CB47 393 aaPredicted RBP4.68□□□□□ -1.66
LIG3-211ENST00000588713 IBSPP21815 317 aaPredicted RBP4.68□□□□□ -1.66
LIG3-211ENST00000588713 CA8P35219 290 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 ERVFC1P60507 584 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 USP46P62068 366 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 INSM1Q01101 510 aaPredicted RBP4.68□□□□□ -1.66
LIG3-211ENST00000588713 RBL2Q08999 1139 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 SRSF5Q13243 272 aaKnown RBP4.68□□□□□ -1.66
LIG3-211ENST00000588713 MTX1Q13505 466 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 RASGRF1Q13972 1273 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 ME3Q16798 604 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 DUSP28Q4G0W2 176 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 NAALADL2Q58DX5 795 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 COLEC12Q5KU26 742 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 ATAT1Q5SQI0 421 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 SPOUT1Q5T280 376 aaKnown RBP4.68□□□□□ -1.66
LIG3-211ENST00000588713 JAKMIP3Q5VZ66 844 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 TATDN1Q6P1N9 297 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 CCDC73Q6ZRK6 1079 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 CCDC149Q6ZUS6 474 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 OTOP3Q7RTS5 596 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 ERC1Q8IUD2 1116 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 CKAP2LQ8IYA6 745 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 GOLGA6L1Q8N7Z2 621 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 C7orf31Q8N865 590 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 SERBP1Q8NC51 408 aaKnown RBP eCLIP4.68□□□□□ -1.66
LIG3-211ENST00000588713 GOLGA5Q8TBA6 731 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 ZNF592Q92610 1267 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 SUCLG2Q96I99 432 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 PPP1R13BQ96KQ4 1090 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 WDR11Q9BZH6 1224 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 SMOC1Q9H4F8 434 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 RC3H2Q9HBD1 1191 aaKnown RBP4.68□□□□□ -1.66
LIG3-211ENST00000588713 ENTPD7Q9NQZ7 604 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 C9orf78Q9NZ63 289 aaPredicted RBP4.68□□□□□ -1.66
LIG3-211ENST00000588713 ORC3Q9UBD5 711 aaPredicted RBP4.68□□□□□ -1.66
LIG3-211ENST00000588713 STK17AQ9UEE5 414 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 SERPINB13Q9UIV8 391 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 CFAP45Q9UL16 551 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 PPP1R9AQ9ULJ8 1098 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 ADAMTS5Q9UNA0 930 aa4.68□□□□□ -1.66
LIG3-211ENST00000588713 MTF2Q9Y483 593 aaPredicted RBP4.68□□□□□ -1.66
LIG3-211ENST00000588713 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.68□□□□□ -1.66
LIG3-211ENST00000588713 FRMPD2Q68DX3 1309 aaPredicted RBP4.68□□□□□ -1.66
LIG3-211ENST00000588713 FREM2Q5SZK8 3169 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 TEX15Q9BXT5 2789 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 VGLL3A8MV65 326 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 HIDE1A8MVS5 230 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 BECN2A8MW95 431 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 USP17L12C9JPN9 530 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 USP17L21D6R901 530 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 TERTO14746 1132 aaKnown RBP4.67□□□□□ -1.66
LIG3-211ENST00000588713 RPS6KA5O75582 802 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 WISP1O95388 367 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 IVLP07476 585 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 SRFP11831 508 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 SFPQP23246 707 aaKnown RBP eCLIP4.67□□□□□ -1.66
LIG3-211ENST00000588713 RPS6KB1P23443 525 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 OAS2P29728 719 aaKnown RBP4.67□□□□□ -1.66
LIG3-211ENST00000588713 ADORA1P30542 326 aa4.67□□□□□ -1.66
LIG3-211ENST00000588713 CASQ1P31415 396 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms