RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 CEP89Q96ST8 783 aa13.37□□□□□ -0.27
LIG3-209ENST00000586435 PCDHA4Q9UN74 947 aa13.37□□□□□ -0.27
LIG3-209ENST00000586435 WDFY4Q6ZS81 3184 aa13.37□□□□□ -0.27
LIG3-209ENST00000586435 DENND4AQ7Z401 1863 aa13.36□□□□□ -0.27
LIG3-209ENST00000586435 M0R2N6 131 aa13.36□□□□□ -0.27
LIG3-209ENST00000586435 STBD1O95210 358 aa13.36□□□□□ -0.27
LIG3-209ENST00000586435 PBX3P40426 434 aa13.36□□□□□ -0.27
LIG3-209ENST00000586435 NLRP5P59047 1200 aa13.36□□□□□ -0.27
LIG3-209ENST00000586435 CCT2P78371 535 aaKnown RBP13.36□□□□□ -0.27
LIG3-209ENST00000586435 SMC1AQ14683 1233 aaKnown RBP13.36□□□□□ -0.27
LIG3-209ENST00000586435 PTPN21Q16825 1174 aa13.36□□□□□ -0.27
LIG3-209ENST00000586435 MIER3Q7Z3K6 550 aa13.36□□□□□ -0.27
LIG3-209ENST00000586435 TMC7Q7Z402 723 aa13.36□□□□□ -0.27
LIG3-209ENST00000586435 ZNF410Q86VK4 478 aa13.36□□□□□ -0.27
LIG3-209ENST00000586435 SUGP1Q8IWZ8 645 aaKnown RBP13.36□□□□□ -0.27
LIG3-209ENST00000586435 FBXL6Q8N531 539 aa13.36□□□□□ -0.27
LIG3-209ENST00000586435 GCOM2Q9BZD3 368 aaPredicted RBP13.36□□□□□ -0.27
LIG3-209ENST00000586435 SEPT9Q9UHD8 586 aaPredicted RBP13.36□□□□□ -0.27
LIG3-209ENST00000586435 ARID2Q68CP9 1835 aa13.35□□□□□ -0.27
LIG3-209ENST00000586435 C2orf71A6NGG8 1288 aa13.35□□□□□ -0.27
LIG3-209ENST00000586435 DEXIO95424 95 aa13.35□□□□□ -0.27
LIG3-209ENST00000586435 TDP2O95551 362 aa13.35□□□□□ -0.27
LIG3-209ENST00000586435 SKIP12755 728 aa13.35□□□□□ -0.27
LIG3-209ENST00000586435 SFPQP23246 707 aaKnown RBP eCLIP13.35□□□□□ -0.27
LIG3-209ENST00000586435 DNM2P50570 870 aa13.35□□□□□ -0.27
LIG3-209ENST00000586435 PTPN5P54829 565 aa13.35□□□□□ -0.27
LIG3-209ENST00000586435 ITIH3Q06033 890 aa13.35□□□□□ -0.27
LIG3-209ENST00000586435 DRP2Q13474 957 aa13.35□□□□□ -0.27
LIG3-209ENST00000586435 TOB2Q14106 344 aaPredicted RBP13.35□□□□□ -0.27
LIG3-209ENST00000586435 MTERF2Q49AM1 385 aa13.35□□□□□ -0.27
LIG3-209ENST00000586435 TPRNQ4KMQ1 711 aa13.35□□□□□ -0.27
LIG3-209ENST00000586435 GALNT17Q6IS24 598 aa13.35□□□□□ -0.27
LIG3-209ENST00000586435 RUFY3Q7L099 469 aa13.35□□□□□ -0.27
LIG3-209ENST00000586435 MRPL43Q8N983 215 aaKnown RBP13.35□□□□□ -0.27
LIG3-209ENST00000586435 RNF169Q8NCN4 708 aa13.35□□□□□ -0.27
LIG3-209ENST00000586435 PRSS33Q8NF86 280 aa13.35□□□□□ -0.27
LIG3-209ENST00000586435 ETNPPLQ8TBG4 499 aa13.35□□□□□ -0.27
LIG3-209ENST00000586435 HELQQ8TDG4 1101 aa13.35□□□□□ -0.27
LIG3-209ENST00000586435 ASIC4Q96FT7 647 aa13.35□□□□□ -0.27
LIG3-209ENST00000586435 ZNF668Q96K58 619 aaPredicted RBP13.35□□□□□ -0.27
LIG3-209ENST00000586435 NECTIN4Q96NY8 510 aa13.35□□□□□ -0.27
LIG3-209ENST00000586435 INO80BQ9C086 356 aaPredicted RBP13.35□□□□□ -0.27
LIG3-209ENST00000586435 NCOA5Q9HCD5 579 aaKnown RBP13.35□□□□□ -0.27
LIG3-209ENST00000586435 HCFC2Q9Y5Z7 792 aa13.35□□□□□ -0.27
LIG3-209ENST00000586435 IRAK3Q9Y616 596 aa13.35□□□□□ -0.27
LIG3-209ENST00000586435 A0A087WZ62 844 aa13.34□□□□□ -0.27
LIG3-209ENST00000586435 MAFO75444 373 aaPredicted RBP13.34□□□□□ -0.27
LIG3-209ENST00000586435 FGFR4P22455 802 aa13.34□□□□□ -0.27
LIG3-209ENST00000586435 PHKA2P46019 1235 aa13.34□□□□□ -0.27
LIG3-209ENST00000586435 ALDH7A1P49419 539 aaKnown RBP13.34□□□□□ -0.27
LIG3-209ENST00000586435 RAB27AP51159 221 aa13.34□□□□□ -0.27
LIG3-209ENST00000586435 BCAR1P56945 870 aa13.34□□□□□ -0.27
LIG3-209ENST00000586435 SSRP1Q08945 709 aaKnown RBP13.34□□□□□ -0.27
LIG3-209ENST00000586435 BMS1Q14692 1282 aaKnown RBP13.34□□□□□ -0.27
LIG3-209ENST00000586435 NPY5RQ15761 445 aa13.34□□□□□ -0.27
LIG3-209ENST00000586435 LLGL2Q6P1M3 1020 aa13.34□□□□□ -0.27
LIG3-209ENST00000586435 BLIDQ8IZY5 108 aa13.34□□□□□ -0.27
LIG3-209ENST00000586435 GJA10Q969M2 543 aa13.34□□□□□ -0.27
LIG3-209ENST00000586435 ZNF274Q96GC6 653 aaPredicted RBP13.34□□□□□ -0.27
LIG3-209ENST00000586435 TMEM169Q96HH4 297 aa13.34□□□□□ -0.27
LIG3-209ENST00000586435 JPH2Q9BR39 696 aaPredicted RBP13.34□□□□□ -0.27
LIG3-209ENST00000586435 FDXACB1Q9BRP7 624 aaPredicted RBP13.34□□□□□ -0.27
LIG3-209ENST00000586435 ZBP1Q9H171 429 aa13.34□□□□□ -0.27
LIG3-209ENST00000586435 ZSWIM6Q9HCJ5 1215 aa13.34□□□□□ -0.27
LIG3-209ENST00000586435 NR2E1Q9Y466 385 aa13.34□□□□□ -0.27
LIG3-209ENST00000586435 CLASP2O75122 1294 aaKnown RBP13.33□□□□□ -0.28
LIG3-209ENST00000586435 ZNF623O75123 536 aa13.33□□□□□ -0.28
LIG3-209ENST00000586435 POLGP54098 1239 aaPredicted RBP13.33□□□□□ -0.28
LIG3-209ENST00000586435 PSMC5P62195 406 aa13.33□□□□□ -0.28
LIG3-209ENST00000586435 GIT2Q14161 759 aa13.33□□□□□ -0.28
LIG3-209ENST00000586435 IER5LQ5T953 404 aa13.33□□□□□ -0.28
LIG3-209ENST00000586435 TWF2Q6IBS0 349 aaKnown RBP13.33□□□□□ -0.28
LIG3-209ENST00000586435 CES5AQ6NT32 575 aa13.33□□□□□ -0.28
LIG3-209ENST00000586435 ADAM7Q9H2U9 754 aa13.33□□□□□ -0.28
LIG3-209ENST00000586435 FAM105AQ9NUU6 356 aa13.33□□□□□ -0.28
LIG3-209ENST00000586435 DZANK1Q9NVP4 752 aa13.33□□□□□ -0.28
LIG3-209ENST00000586435 PPME1Q9Y570 386 aa13.33□□□□□ -0.28
LIG3-209ENST00000586435 TMEM150BA6NC51 233 aa13.32□□□□□ -0.28
LIG3-209ENST00000586435 CPLX1O14810 134 aa13.32□□□□□ -0.28
LIG3-209ENST00000586435 CSDE1O75534 798 aaKnown RBP13.32□□□□□ -0.28
LIG3-209ENST00000586435 CTSAP10619 480 aa13.32□□□□□ -0.28
LIG3-209ENST00000586435 MTHFRP42898 656 aa13.32□□□□□ -0.28
LIG3-209ENST00000586435 NUBP1P53384 320 aa13.32□□□□□ -0.28
LIG3-209ENST00000586435 TCF15Q12870 199 aa13.32□□□□□ -0.28
LIG3-209ENST00000586435 PPP2R5CQ13362 524 aa13.32□□□□□ -0.28
LIG3-209ENST00000586435 NONOQ15233 471 aaKnown RBP eCLIP13.32□□□□□ -0.28
LIG3-209ENST00000586435 CPLX2Q6PUV4 134 aaKnown RBP13.32□□□□□ -0.28
LIG3-209ENST00000586435 GLB1LQ6UWU2 654 aa13.32□□□□□ -0.28
LIG3-209ENST00000586435 ANO5Q75V66 913 aa13.32□□□□□ -0.28
LIG3-209ENST00000586435 KRT25Q7Z3Z0 450 aa13.32□□□□□ -0.28
LIG3-209ENST00000586435 DDX53Q86TM3 631 aaKnown RBP13.32□□□□□ -0.28
LIG3-209ENST00000586435 RHPN2Q8IUC4 686 aa13.32□□□□□ -0.28
LIG3-209ENST00000586435 IGSF21Q96ID5 467 aa13.32□□□□□ -0.28
LIG3-209ENST00000586435 TM6SF1Q9BZW5 370 aa13.32□□□□□ -0.28
LIG3-209ENST00000586435 POMKQ9H5K3 350 aa13.32□□□□□ -0.28
LIG3-209ENST00000586435 TBC1D13Q9NVG8 400 aa13.32□□□□□ -0.28
LIG3-209ENST00000586435 SUCLA2Q9P2R7 463 aaPredicted RBP13.32□□□□□ -0.28
LIG3-209ENST00000586435 DDX25Q9UHL0 483 aaKnown RBP13.32□□□□□ -0.28
LIG3-209ENST00000586435 PIN4Q9Y237 131 aaKnown RBP13.32□□□□□ -0.28
LIG3-209ENST00000586435 CYP46A1Q9Y6A2 500 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms