RNA–Protein interactions for RNA: ENST00000576613.5

CTDNEP1-212, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 3

Gene CTDNEP1, Length 606 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-212ENST00000576613 NAP1L2Q9ULW6 460 aaPredicted RBP13.15□□□□□ -0.3
CTDNEP1-212ENST00000576613 PRR23AA6NEV1 266 aa13.14□□□□□ -0.31
CTDNEP1-212ENST00000576613 NT5C1B-RDH14C9J2C7 533 aa13.14□□□□□ -0.31
CTDNEP1-212ENST00000576613 ZC3H11AO75152 810 aaKnown RBP eCLIP13.14□□□□□ -0.31
CTDNEP1-212ENST00000576613 SKIP12755 728 aa13.14□□□□□ -0.31
CTDNEP1-212ENST00000576613 CDC27P30260 824 aa13.14□□□□□ -0.31
CTDNEP1-212ENST00000576613 CLCN5P51795 746 aa13.14□□□□□ -0.31
CTDNEP1-212ENST00000576613 POLGP54098 1239 aaPredicted RBP13.14□□□□□ -0.31
CTDNEP1-212ENST00000576613 FGD1P98174 961 aa13.14□□□□□ -0.31
CTDNEP1-212ENST00000576613 KRT32Q14532 448 aa13.14□□□□□ -0.31
CTDNEP1-212ENST00000576613 ASCL5Q7RTU5 278 aa13.14□□□□□ -0.31
CTDNEP1-212ENST00000576613 BICD2Q8TD16 824 aa13.14□□□□□ -0.31
CTDNEP1-212ENST00000576613 ACSF2Q96CM8 615 aaPredicted RBP13.14□□□□□ -0.31
CTDNEP1-212ENST00000576613 ZNF668Q96K58 619 aaPredicted RBP13.14□□□□□ -0.31
CTDNEP1-212ENST00000576613 ZBP1Q9H171 429 aa13.14□□□□□ -0.31
CTDNEP1-212ENST00000576613 CHST12Q9NRB3 414 aa13.14□□□□□ -0.31
CTDNEP1-212ENST00000576613 DISC1Q9NRI5 854 aa13.14□□□□□ -0.31
CTDNEP1-212ENST00000576613 IRAK3Q9Y616 596 aa13.14□□□□□ -0.31
CTDNEP1-212ENST00000576613 DENND4AQ7Z401 1863 aa13.14□□□□□ -0.31
CTDNEP1-212ENST00000576613 MYO10Q9HD67 2058 aa13.14□□□□□ -0.31
CTDNEP1-212ENST00000576613 SPTBN4Q9H254 2564 aa13.14□□□□□ -0.31
CTDNEP1-212ENST00000576613 VPS13AQ96RL7 3174 aa13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 SPDYE4A6NLX3 237 aa13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 ZNF862O60290 1169 aa13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 ASGR2P07307 311 aa13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 HMGB1P09429 215 aaKnown RBP13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 WEE2P0C1S8 567 aa13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 CTSAP10619 480 aa13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 FGFR4P22455 802 aa13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 SFPQP23246 707 aaKnown RBP eCLIP13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 SFNP31947 248 aa13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 CIITAP33076 1130 aa13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 DNM2P50570 870 aa13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 JAK3P52333 1124 aa13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 TWF2Q6IBS0 349 aaKnown RBP13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 GLB1LQ6UWU2 654 aa13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 CABP7Q86V35 215 aa13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 PPFIBP1Q86W92 1011 aa13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 C12orf76Q8N812 135 aaPredicted RBP13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 RIT2Q99578 217 aa13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 TRAIPQ9BWF2 469 aa13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 GCOM2Q9BZD3 368 aaPredicted RBP13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 SMOC2Q9H3U7 446 aa13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 CYP26B1Q9NR63 512 aa13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 FAM217BQ9NTX9 383 aaPredicted RBP13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 STK39Q9UEW8 545 aa13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 LIMD1Q9UGP4 676 aa13.13□□□□□ -0.31
CTDNEP1-212ENST00000576613 DMDP11532 3685 aa13.12□□□□□ -0.31
CTDNEP1-212ENST00000576613 GAS7O60861 476 aa13.12□□□□□ -0.31
CTDNEP1-212ENST00000576613 EPCAMP16422 314 aa13.12□□□□□ -0.31
CTDNEP1-212ENST00000576613 ADD1P35611 737 aaKnown RBP13.12□□□□□ -0.31
CTDNEP1-212ENST00000576613 PHKA2P46019 1235 aa13.12□□□□□ -0.31
CTDNEP1-212ENST00000576613 AKAP17AQ02040 695 aaKnown RBP13.12□□□□□ -0.31
CTDNEP1-212ENST00000576613 RNASELQ05823 741 aaKnown RBP13.12□□□□□ -0.31
CTDNEP1-212ENST00000576613 DDX53Q86TM3 631 aaKnown RBP13.12□□□□□ -0.31
CTDNEP1-212ENST00000576613 CCDC148Q8NFR7 591 aa13.12□□□□□ -0.31
CTDNEP1-212ENST00000576613 NKD2Q969F2 451 aaPredicted RBP13.12□□□□□ -0.31
CTDNEP1-212ENST00000576613 LENG9Q96B70 501 aa13.12□□□□□ -0.31
CTDNEP1-212ENST00000576613 IGSF21Q96ID5 467 aa13.12□□□□□ -0.31
CTDNEP1-212ENST00000576613 INO80BQ9C086 356 aaPredicted RBP13.12□□□□□ -0.31
CTDNEP1-212ENST00000576613 SFXN1Q9H9B4 322 aa13.12□□□□□ -0.31
CTDNEP1-212ENST00000576613 CHMP2AO43633 222 aa13.11□□□□□ -0.31
CTDNEP1-212ENST00000576613 RAB27AP51159 221 aa13.11□□□□□ -0.31
CTDNEP1-212ENST00000576613 TSGA10IPQ3SY00 556 aa13.11□□□□□ -0.31
CTDNEP1-212ENST00000576613 NOMO2Q5JPE7 1267 aa13.11□□□□□ -0.31
CTDNEP1-212ENST00000576613 LRCH2Q5VUJ6 765 aa13.11□□□□□ -0.31
CTDNEP1-212ENST00000576613 TMC5Q6UXY8 1006 aa13.11□□□□□ -0.31
CTDNEP1-212ENST00000576613 CCDC149Q6ZUS6 474 aa13.11□□□□□ -0.31
CTDNEP1-212ENST00000576613 OTOP3Q7RTS5 596 aa13.11□□□□□ -0.31
CTDNEP1-212ENST00000576613 TMEM173Q86WV6 379 aaPredicted RBP13.11□□□□□ -0.31
CTDNEP1-212ENST00000576613 FLCNQ8NFG4 579 aa13.11□□□□□ -0.31
CTDNEP1-212ENST00000576613 RDM1Q8NG50 284 aa13.11□□□□□ -0.31
CTDNEP1-212ENST00000576613 SLC22A17Q8WUG5 538 aa13.11□□□□□ -0.31
CTDNEP1-212ENST00000576613 AUTS2Q8WXX7 1259 aa13.11□□□□□ -0.31
CTDNEP1-212ENST00000576613 CCDC136Q96JN2 1154 aa13.11□□□□□ -0.31
CTDNEP1-212ENST00000576613 TEKT3Q9BXF9 490 aa13.11□□□□□ -0.31
CTDNEP1-212ENST00000576613 EMILIN2Q9BXX0 1053 aa13.11□□□□□ -0.31
CTDNEP1-212ENST00000576613 TBC1D13Q9NVG8 400 aa13.11□□□□□ -0.31
CTDNEP1-212ENST00000576613 SEPT9Q9UHD8 586 aaPredicted RBP13.11□□□□□ -0.31
CTDNEP1-212ENST00000576613 PIN4Q9Y237 131 aaKnown RBP13.11□□□□□ -0.31
CTDNEP1-212ENST00000576613 MSH4O15457 936 aa13.1□□□□□ -0.31
CTDNEP1-212ENST00000576613 PRPF3O43395 683 aaKnown RBP13.1□□□□□ -0.31
CTDNEP1-212ENST00000576613 CSDE1O75534 798 aaKnown RBP13.1□□□□□ -0.31
CTDNEP1-212ENST00000576613 USP11P51784 963 aa13.1□□□□□ -0.31
CTDNEP1-212ENST00000576613 TDGQ13569 410 aa13.1□□□□□ -0.31
CTDNEP1-212ENST00000576613 TARBP2Q15633 366 aaKnown RBP13.1□□□□□ -0.31
CTDNEP1-212ENST00000576613 UGCGQ16739 394 aa13.1□□□□□ -0.31
CTDNEP1-212ENST00000576613 ADCK5Q3MIX3 580 aa13.1□□□□□ -0.31
CTDNEP1-212ENST00000576613 MTERF2Q49AM1 385 aa13.1□□□□□ -0.31
CTDNEP1-212ENST00000576613 XKR3Q5GH77 459 aa13.1□□□□□ -0.31
CTDNEP1-212ENST00000576613 KANK3Q6NY19 840 aa13.1□□□□□ -0.31
CTDNEP1-212ENST00000576613 FRMD5Q7Z6J6 570 aa13.1□□□□□ -0.31
CTDNEP1-212ENST00000576613 GPR149Q86SP6 731 aa13.1□□□□□ -0.31
CTDNEP1-212ENST00000576613 ZNF410Q86VK4 478 aa13.1□□□□□ -0.31
CTDNEP1-212ENST00000576613 URGCPQ8TCY9 931 aa13.1□□□□□ -0.31
CTDNEP1-212ENST00000576613 SLC5A5Q92911 643 aa13.1□□□□□ -0.31
CTDNEP1-212ENST00000576613 LPPQ93052 612 aa13.1□□□□□ -0.31
CTDNEP1-212ENST00000576613 PGBD4Q96DM1 585 aa13.1□□□□□ -0.31
CTDNEP1-212ENST00000576613 NRDE2Q9H7Z3 1164 aa13.1□□□□□ -0.31
CTDNEP1-212ENST00000576613 FAM105AQ9NUU6 356 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms