RNA–Protein interactions for RNA: ENST00000576218.5

SMG6-220, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 902 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-220ENST00000576218 RNF149Q8NC42 400 aa16.97■□□□□ 0.31
SMG6-220ENST00000576218 INTS4Q96HW7 963 aaKnown RBP16.97■□□□□ 0.31
SMG6-220ENST00000576218 CDK5RAP3Q96JB5 506 aa16.97■□□□□ 0.31
SMG6-220ENST00000576218 VWA3AA6NCI4 1184 aa16.96■□□□□ 0.31
SMG6-220ENST00000576218 TBKBP1A7MCY6 615 aa16.96■□□□□ 0.31
SMG6-220ENST00000576218 HOXA2O43364 376 aa16.96■□□□□ 0.31
SMG6-220ENST00000576218 DGKIO75912 1065 aa16.96■□□□□ 0.31
SMG6-220ENST00000576218 SPATA31C1P0DKV0 1188 aa16.96■□□□□ 0.31
SMG6-220ENST00000576218 NCBP1Q09161 790 aaKnown RBP16.96■□□□□ 0.31
SMG6-220ENST00000576218 PDIA5Q14554 519 aa16.96■□□□□ 0.31
SMG6-220ENST00000576218 EPC2Q52LR7 807 aa16.96■□□□□ 0.31
SMG6-220ENST00000576218 FAM102BQ5T8I3 360 aa16.96■□□□□ 0.31
SMG6-220ENST00000576218 SRGAP1Q7Z6B7 1085 aa16.96■□□□□ 0.31
SMG6-220ENST00000576218 CMTR2Q8IYT2 770 aaKnown RBP16.96■□□□□ 0.31
SMG6-220ENST00000576218 C4orf32Q8N8J7 132 aa16.96■□□□□ 0.31
SMG6-220ENST00000576218 MCPH1Q8NEM0 835 aa16.96■□□□□ 0.31
SMG6-220ENST00000576218 RASSF8Q8NHQ8 419 aa16.96■□□□□ 0.31
SMG6-220ENST00000576218 POLR3FQ9H1D9 316 aaPredicted RBP16.96■□□□□ 0.31
SMG6-220ENST00000576218 TMEM161AQ9NX61 479 aa16.96■□□□□ 0.31
SMG6-220ENST00000576218 DBR1Q9UK59 544 aaKnown RBP16.96■□□□□ 0.31
SMG6-220ENST00000576218 KIAA1024Q9UPX6 916 aa16.96■□□□□ 0.31
SMG6-220ENST00000576218 CHD9Q3L8U1 2897 aa16.96■□□□□ 0.31
SMG6-220ENST00000576218 C9IYK1 514 aa16.95■□□□□ 0.3
SMG6-220ENST00000576218 INO80B-WBP1J3KQ70 363 aa16.95■□□□□ 0.3
SMG6-220ENST00000576218 BMP15O95972 392 aa16.95■□□□□ 0.3
SMG6-220ENST00000576218 MUTP22033 750 aa16.95■□□□□ 0.3
SMG6-220ENST00000576218 ATP2C1P98194 919 aaPredicted RBP16.95■□□□□ 0.3
SMG6-220ENST00000576218 GPM6BQ13491 265 aa16.95■□□□□ 0.3
SMG6-220ENST00000576218 PTPROQ16827 1216 aa16.95■□□□□ 0.3
SMG6-220ENST00000576218 CHST12Q9NRB3 414 aa16.95■□□□□ 0.3
SMG6-220ENST00000576218 DDX19AQ9NUU7 478 aaKnown RBP16.95■□□□□ 0.3
SMG6-220ENST00000576218 TTC3P53804 2025 aa16.95■□□□□ 0.3
SMG6-220ENST00000576218 ARID2Q68CP9 1835 aa16.95■□□□□ 0.3
SMG6-220ENST00000576218 LRRIQ4A6NIV6 560 aa16.94■□□□□ 0.3
SMG6-220ENST00000576218 CSPG5O95196 566 aa16.94■□□□□ 0.3
SMG6-220ENST00000576218 SKIP12755 728 aa16.94■□□□□ 0.3
SMG6-220ENST00000576218 GATMP50440 423 aa16.94■□□□□ 0.3
SMG6-220ENST00000576218 DSC3Q14574 896 aa16.94■□□□□ 0.3
SMG6-220ENST00000576218 TMEM132AQ24JP5 1023 aa16.94■□□□□ 0.3
SMG6-220ENST00000576218 PADI6Q6TGC4 694 aa16.94■□□□□ 0.3
SMG6-220ENST00000576218 IGSF22Q8N9C0 903 aa16.94■□□□□ 0.3
SMG6-220ENST00000576218 SNX21Q969T3 373 aa16.94■□□□□ 0.3
SMG6-220ENST00000576218 ZNF689Q96CS4 500 aaPredicted RBP16.94■□□□□ 0.3
SMG6-220ENST00000576218 C11orf84Q9BUA3 381 aaPredicted RBP16.94■□□□□ 0.3
SMG6-220ENST00000576218 ELAC1Q9H777 363 aaKnown RBP16.94■□□□□ 0.3
SMG6-220ENST00000576218 XPNPEP1Q9NQW7 623 aa16.94■□□□□ 0.3
SMG6-220ENST00000576218 AAASQ9NRG9 546 aa16.94■□□□□ 0.3
SMG6-220ENST00000576218 COL4A4P53420 1690 aaPredicted RBP16.94■□□□□ 0.3
SMG6-220ENST00000576218 PP2D1A8MPX8 630 aa16.93■□□□□ 0.3
SMG6-220ENST00000576218 FGFR1P11362 822 aa16.93■□□□□ 0.3
SMG6-220ENST00000576218 SYT1P21579 422 aa16.93■□□□□ 0.3
SMG6-220ENST00000576218 ARL6IP4Q66PJ3 421 aaKnown RBP16.93■□□□□ 0.3
SMG6-220ENST00000576218 ECHDC2Q86YB7 292 aa16.93■□□□□ 0.3
SMG6-220ENST00000576218 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.93■□□□□ 0.3
SMG6-220ENST00000576218 BHMT2Q9H2M3 363 aa16.93■□□□□ 0.3
SMG6-220ENST00000576218 IFT122Q9HBG6 1241 aa16.93■□□□□ 0.3
SMG6-220ENST00000576218 DNM3Q9UQ16 869 aa16.93■□□□□ 0.3
SMG6-220ENST00000576218 MTCH2Q9Y6C9 303 aa16.93■□□□□ 0.3
SMG6-220ENST00000576218 MRPL42Q9Y6G3 142 aaKnown RBP16.93■□□□□ 0.3
SMG6-220ENST00000576218 COL4A6Q14031 1691 aa16.93■□□□□ 0.3
SMG6-220ENST00000576218 CDH23Q9H251 3354 aa16.92■□□□□ 0.3
SMG6-220ENST00000576218 SSBP05455 408 aaKnown RBP eCLIP16.92■□□□□ 0.3
SMG6-220ENST00000576218 CDC25AP30304 524 aa16.92■□□□□ 0.3
SMG6-220ENST00000576218 BMPR1AP36894 532 aa16.92■□□□□ 0.3
SMG6-220ENST00000576218 RAB27AP51159 221 aa16.92■□□□□ 0.3
SMG6-220ENST00000576218 CAPSQ13938 189 aa16.92■□□□□ 0.3
SMG6-220ENST00000576218 ZBTB8OSQ8IWT0 167 aa16.92■□□□□ 0.3
SMG6-220ENST00000576218 ASAP3Q8TDY4 903 aa16.92■□□□□ 0.3
SMG6-220ENST00000576218 IFT74Q96LB3 600 aa16.92■□□□□ 0.3
SMG6-220ENST00000576218 NT5C3AQ9H0P0 336 aa16.92■□□□□ 0.3
SMG6-220ENST00000576218 RC3H2Q9HBD1 1191 aaKnown RBP16.92■□□□□ 0.3
SMG6-220ENST00000576218 GPRC5CQ9NQ84 441 aa16.92■□□□□ 0.3
SMG6-220ENST00000576218 AGPAT5Q9NUQ2 364 aa16.92■□□□□ 0.3
SMG6-220ENST00000576218 PCDHB12Q9Y5F1 795 aa16.92■□□□□ 0.3
SMG6-220ENST00000576218 A0A0U1RQF3 1178 aa16.91■□□□□ 0.3
SMG6-220ENST00000576218 H3BNC9 293 aa16.91■□□□□ 0.3
SMG6-220ENST00000576218 STX6O43752 255 aa16.91■□□□□ 0.3
SMG6-220ENST00000576218 RB1P06400 928 aa16.91■□□□□ 0.3
SMG6-220ENST00000576218 LIG1P18858 919 aa16.91■□□□□ 0.3
SMG6-220ENST00000576218 GLRA2P23416 452 aa16.91■□□□□ 0.3
SMG6-220ENST00000576218 PCBP1Q15365 356 aaKnown RBP eCLIP16.91■□□□□ 0.3
SMG6-220ENST00000576218 SF3A1Q15459 793 aaKnown RBP16.91■□□□□ 0.3
SMG6-220ENST00000576218 LONRF3Q496Y0 759 aa16.91■□□□□ 0.3
SMG6-220ENST00000576218 LRRC43Q8N309 656 aa16.91■□□□□ 0.3
SMG6-220ENST00000576218 DEPTORQ8TB45 409 aa16.91■□□□□ 0.3
SMG6-220ENST00000576218 CALML4Q96GE6 196 aa16.91■□□□□ 0.3
SMG6-220ENST00000576218 PLVAPQ9BX97 442 aa16.91■□□□□ 0.3
SMG6-220ENST00000576218 TRIM6Q9C030 488 aaPredicted RBP16.91■□□□□ 0.3
SMG6-220ENST00000576218 TMEM117Q9H0C3 514 aa16.91■□□□□ 0.3
SMG6-220ENST00000576218 LMCD1Q9NZU5 365 aa16.91■□□□□ 0.3
SMG6-220ENST00000576218 CHD7Q9P2D1 2997 aa16.91■□□□□ 0.3
SMG6-220ENST00000576218 LPXNO60711 386 aa16.9■□□□□ 0.3
SMG6-220ENST00000576218 EOMESO95936 686 aa16.9■□□□□ 0.3
SMG6-220ENST00000576218 CYP11B2P19099 503 aa16.9■□□□□ 0.3
SMG6-220ENST00000576218 ARL2P36404 184 aa16.9■□□□□ 0.3
SMG6-220ENST00000576218 UBA7P41226 1012 aa16.9■□□□□ 0.3
SMG6-220ENST00000576218 PTENP60484 403 aa16.9■□□□□ 0.3
SMG6-220ENST00000576218 FAM189BP81408 668 aa16.9■□□□□ 0.3
SMG6-220ENST00000576218 CEBPZQ03701 1054 aaKnown RBP16.9■□□□□ 0.3
SMG6-220ENST00000576218 PPP2R5AQ15172 486 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 222.5 ms