RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 EPOPA6NHQ4 379 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 ENPP3O14638 875 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 VTNP04004 478 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 P4HBP07237 508 aaKnown RBP9.07□□□□□ -0.96
VPS53-214ENST00000572607 IBSPP21815 317 aaPredicted RBP9.07□□□□□ -0.96
VPS53-214ENST00000572607 KCNQ1P51787 676 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 HTRA4P83105 476 aaPredicted RBP9.07□□□□□ -0.96
VPS53-214ENST00000572607 ORC2Q13416 577 aaPredicted RBP9.07□□□□□ -0.96
VPS53-214ENST00000572607 KIZQ2M2Z5 673 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 OTUD6AQ7L8S5 288 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 MICALL1Q8N3F8 863 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 LRRC71Q8N4P6 559 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 FIBCD1Q8N539 461 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 FBXO18Q8NFZ0 1043 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 NEK9Q8TD19 979 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 NLRP7Q8WX94 980 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 SLC7A3Q8WY07 619 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 HAS1Q92839 578 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 PPP1R16BQ96T49 567 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 OSMRQ99650 979 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 PRR14Q9BWN1 585 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 NIFKQ9BYG3 293 aaKnown RBP9.07□□□□□ -0.96
VPS53-214ENST00000572607 OSBPL7Q9BZF2 842 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 FOXP1Q9H334 677 aaPredicted RBP9.07□□□□□ -0.96
VPS53-214ENST00000572607 EPHX3Q9H6B9 360 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 ZSWIM4Q9H7M6 989 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 AGO3Q9H9G7 860 aaKnown RBP9.07□□□□□ -0.96
VPS53-214ENST00000572607 C1orf112Q9NSG2 853 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 MTUS1Q9ULD2 1270 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 LRFN2Q9ULH4 789 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 PPME1Q9Y570 386 aa9.07□□□□□ -0.96
VPS53-214ENST00000572607 TRIP12Q14669 1992 aaPredicted RBP9.06□□□□□ -0.96
VPS53-214ENST00000572607 WDFY4Q6ZS81 3184 aa9.06□□□□□ -0.96
VPS53-214ENST00000572607 H3BQV1 296 aa9.06□□□□□ -0.96
VPS53-214ENST00000572607 RBAK-RBAKDNI3L0D1 243 aa9.06□□□□□ -0.96
VPS53-214ENST00000572607 EML1O00423 815 aa9.06□□□□□ -0.96
VPS53-214ENST00000572607 MCM7P33993 719 aa9.06□□□□□ -0.96
VPS53-214ENST00000572607 MLLT3P42568 568 aaPredicted RBP9.06□□□□□ -0.96
VPS53-214ENST00000572607 TXKP42681 527 aa9.06□□□□□ -0.96
VPS53-214ENST00000572607 TRAPPC10P48553 1259 aa9.06□□□□□ -0.96
VPS53-214ENST00000572607 POLGP54098 1239 aaPredicted RBP9.06□□□□□ -0.96
VPS53-214ENST00000572607 NLRP11P59045 1033 aaKnown RBP9.06□□□□□ -0.96
VPS53-214ENST00000572607 ERVK-21P61565 698 aa9.06□□□□□ -0.96
VPS53-214ENST00000572607 TMEM266Q2M3C6 531 aa9.06□□□□□ -0.96
VPS53-214ENST00000572607 TTC38Q5R3I4 469 aa9.06□□□□□ -0.96
VPS53-214ENST00000572607 NPAS4Q8IUM7 802 aa9.06□□□□□ -0.96
VPS53-214ENST00000572607 ERMNQ8TAM6 284 aa9.06□□□□□ -0.96
VPS53-214ENST00000572607 FAM122AQ96E09 287 aa9.06□□□□□ -0.96
VPS53-214ENST00000572607 CEP170P1Q96L14 293 aa9.06□□□□□ -0.96
VPS53-214ENST00000572607 TBC1D32Q96NH3 1257 aa9.06□□□□□ -0.96
VPS53-214ENST00000572607 LXNQ9BS40 222 aa9.06□□□□□ -0.96
VPS53-214ENST00000572607 LRFN3Q9BTN0 628 aa9.06□□□□□ -0.96
VPS53-214ENST00000572607 GCOM2Q9BZD3 368 aaPredicted RBP9.06□□□□□ -0.96
VPS53-214ENST00000572607 TTC12Q9H892 705 aaPredicted RBP9.06□□□□□ -0.96
VPS53-214ENST00000572607 ERVK-5Q9HDB9 667 aa9.06□□□□□ -0.96
VPS53-214ENST00000572607 ST3GAL5Q9UNP4 418 aa9.06□□□□□ -0.96
VPS53-214ENST00000572607 NOC2LQ9Y3T9 749 aaKnown RBP9.06□□□□□ -0.96
VPS53-214ENST00000572607 RWDD3Q9Y3V2 267 aa9.06□□□□□ -0.96
VPS53-214ENST00000572607 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.06□□□□□ -0.96
VPS53-214ENST00000572607 ADGRA3Q8IWK6 1321 aa9.05□□□□□ -0.96
VPS53-214ENST00000572607 MUC6Q6W4X9 2439 aa9.05□□□□□ -0.96
VPS53-214ENST00000572607 RFXAPO00287 272 aa9.05□□□□□ -0.96
VPS53-214ENST00000572607 GPR32O75388 356 aa9.05□□□□□ -0.96
VPS53-214ENST00000572607 ZSCAN20P17040 1043 aaPredicted RBP9.05□□□□□ -0.96
VPS53-214ENST00000572607 POU3F3P20264 500 aaPredicted RBP9.05□□□□□ -0.96
VPS53-214ENST00000572607 SFPQP23246 707 aaKnown RBP eCLIP9.05□□□□□ -0.96
VPS53-214ENST00000572607 EIF4BP23588 611 aaKnown RBP9.05□□□□□ -0.96
VPS53-214ENST00000572607 YWHABP31946 246 aaKnown RBP9.05□□□□□ -0.96
VPS53-214ENST00000572607 RFC5P40937 340 aa9.05□□□□□ -0.96
VPS53-214ENST00000572607 GPC3P51654 580 aa9.05□□□□□ -0.96
VPS53-214ENST00000572607 CYP4A11Q02928 519 aa9.05□□□□□ -0.96
VPS53-214ENST00000572607 GRB10Q13322 594 aa9.05□□□□□ -0.96
VPS53-214ENST00000572607 BTG3Q14201 252 aaPredicted RBP9.05□□□□□ -0.96
VPS53-214ENST00000572607 CTTNQ14247 550 aaKnown RBP9.05□□□□□ -0.96
VPS53-214ENST00000572607 SKIV2LQ15477 1246 aaKnown RBP9.05□□□□□ -0.96
VPS53-214ENST00000572607 TARBP2Q15633 366 aaKnown RBP9.05□□□□□ -0.96
VPS53-214ENST00000572607 PTPROQ16827 1216 aa9.05□□□□□ -0.96
VPS53-214ENST00000572607 PLA2G4FQ68DD2 849 aa9.05□□□□□ -0.96
VPS53-214ENST00000572607 MCTP1Q6DN14 999 aa9.05□□□□□ -0.96
VPS53-214ENST00000572607 ANO5Q75V66 913 aa9.05□□□□□ -0.96
VPS53-214ENST00000572607 SPRED2Q7Z698 418 aa9.05□□□□□ -0.96
VPS53-214ENST00000572607 NOSTRINQ8IVI9 506 aa9.05□□□□□ -0.96
VPS53-214ENST00000572607 TPH2Q8IWU9 490 aa9.05□□□□□ -0.96
VPS53-214ENST00000572607 C4orf19Q8IY42 314 aa9.05□□□□□ -0.96
VPS53-214ENST00000572607 LINC01465Q8N7H1 131 aa9.05□□□□□ -0.96
VPS53-214ENST00000572607 DYDC2Q96IM9 177 aa9.05□□□□□ -0.96
VPS53-214ENST00000572607 TMX3Q96JJ7 454 aa9.05□□□□□ -0.96
VPS53-214ENST00000572607 EIF2AK1Q9BQI3 630 aaKnown RBP9.05□□□□□ -0.96
VPS53-214ENST00000572607 SH2D3AQ9BRG2 576 aa9.05□□□□□ -0.96
VPS53-214ENST00000572607 INO80BQ9C086 356 aaPredicted RBP9.05□□□□□ -0.96
VPS53-214ENST00000572607 CYP26B1Q9NR63 512 aa9.05□□□□□ -0.96
VPS53-214ENST00000572607 SUCLA2Q9P2R7 463 aaPredicted RBP9.05□□□□□ -0.96
VPS53-214ENST00000572607 SMC3Q9UQE7 1217 aa9.05□□□□□ -0.96
VPS53-214ENST00000572607 PCDHB7Q9Y5E2 793 aa9.05□□□□□ -0.96
VPS53-214ENST00000572607 PIEZO1Q92508 2521 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 KAT6AQ92794 2004 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 ATG2AQ2TAZ0 1938 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 TMEM150BA6NC51 233 aa9.04□□□□□ -0.96
VPS53-214ENST00000572607 GAS2O43903 313 aaKnown RBP9.04□□□□□ -0.96
VPS53-214ENST00000572607 MAFO75444 373 aaPredicted RBP9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms